-
Notifications
You must be signed in to change notification settings - Fork 135
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
* update ds000117 Co-authored-by: Andrew Janke <andrew@apjanke.net> * manually delete download trash file ds000117/derivatives/freesurfer/sub-01/ses-mri/anat/label/.lh.BA.thresh.annot.f3h5wZ Co-authored-by: Andrew Janke <andrew@apjanke.net>
- Loading branch information
1 parent
2bbb334
commit 74117b7
Showing
975 changed files
with
43,462 additions
and
37,449 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,2 +1,2 @@ | ||
| run-*_echo-*_FLASH.json | ||
| **/sub-*_ses-mri_run-*_echo-*_FLASH.nii.gz | ||
| run-*_echo-*_FLASH.json | ||
| **/sub-*_ses-mri_run-*_echo-*_FLASH.nii.gz |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file was deleted.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,10 +1,50 @@ | ||
| { | ||
| "RepetitionTime": 2.25, | ||
| "EchoTime": 0.00298, | ||
| "InversionTime": 0.9, | ||
| "FlipAngle": 9, | ||
| "Manufacturer": "Siemens", | ||
| "ManufacturersModelName": "TIM TRIO", | ||
| "MagneticFieldStrength": 3, | ||
| "PulseSequenceType": "MPRAGE" | ||
| } | ||
| "InPlanePhaseEncodingDirectionDICOM": "ROW", | ||
| "InversionTime": 0.9, | ||
| "ImageComments": "V", | ||
| "ProcedureStepDescription": "CBU_Neuroimaging", | ||
| "DeviceSerialNumber": "35119", | ||
| "AcquisitionMatrixPE": 246, | ||
| "ManufacturersModelName": "TrioTim", | ||
| "ProtocolName": "CBU_MPRAGE", | ||
| "RepetitionTime": 2.25, | ||
| "PhaseEncodingSteps": 215, | ||
| "MRAcquisitionType": "3D", | ||
| "ParallelReductionFactorInPlane": 2, | ||
| "SliceThickness": 1, | ||
| "AcquisitionNumber": 1, | ||
| "InstitutionName": "MRC Cognition and Brain Sciences Unit", | ||
| "DwellTime": 8.5e-06, | ||
| "PulseSequenceDetails": "%SiemensSeq%_tfl", | ||
| "ScanningSequence": "GR_IR", | ||
| "Manufacturer": "Siemens", | ||
| "ConversionSoftware": "dcm2niix", | ||
| "PercentPhaseFOV": 100, | ||
| "ReconMatrixPE": 256, | ||
| "FlipAngle": 9, | ||
| "ConversionSoftwareVersion": "v1.0.20171215 GCC4.4.7", | ||
| "SeriesDescription": "CBU_MPRAGE", | ||
| "PartialFourier": 0.875, | ||
| "InstitutionAddress": "15 Chaucer Road, Cambridge CB2 7EF, UK", | ||
| "SequenceName": "_tfl3d1_ns", | ||
| "MagneticFieldStrength": 3, | ||
| "ImageType": [ | ||
| "ORIGINAL", | ||
| "PRIMARY", | ||
| "M", | ||
| "ND", | ||
| "NORM" | ||
| ], | ||
| "ReceiveCoilName": "HeadMatrix", | ||
| "EchoTime": 0.00298, | ||
| "SequenceVariant": "SP_MP_OSP", | ||
| "PhaseResolution": 0.96, | ||
| "BaseResolution": 256, | ||
| "PixelBandwidth": 230, | ||
| "ScanOptions": "IR_PFP", | ||
| "SoftwareVersions": "syngo_MR_B15", | ||
| "StationName": "MRC35119", | ||
| "Modality": "MR", | ||
| "PatientPosition": "HFS", | ||
| "PulseSequenceType": "MPRAGE" | ||
| } |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,11 +1,20 @@ | ||
| { | ||
| "BIDSVersion": "1.0.2", | ||
| "License": "CC0", | ||
| "Name": "A multi-subject, multi-modal human neuroimaging dataset", | ||
| "Authors": ["Wakeman, DG", "Henson, RN"], | ||
| "Acknowledgements": "This work was supported by the UK Medical Research Council (MC_A060_5PR10) and Elekta Ltd. We would also like to acknowledge the contribution of Andre van der Kouwe and the A.A. Martinos Center for Biomedical Imaging (MGH) for providing the Multi-Echo FLASH sequences used in this work.", | ||
| "HowToAcknowledge": "Cite this paper: https://www.ncbi.nlm.nih.gov/pubmed/25977808 and consider including the following message: 'This data was obtained from the OpenfMRI database. Its accession number is ds000117'", | ||
| "ReferencesAndLinks": ["https://www.ncbi.nlm.nih.gov/pubmed/25977808", "https://openfmri.org/dataset/ds000117/"], | ||
| "Funding": ["UK Medical Research Council (MC_A060_5PR10)","Elekta Ltd."] | ||
| } | ||
|
|
||
| "Name": "Multisubject, multimodal face processing", | ||
| "License": "CC0", | ||
| "Authors": [ | ||
| "Wakeman, DG", | ||
| "Henson, RN" | ||
| ], | ||
| "Acknowledgements": "This work was supported by the UK Medical Research Council (SUAG/010\nRG91365) and Elekta Ltd. We would also like to acknowledge the contribution of Andre van der Kouwe and the A.A. Martinos Center for Biomedical Imaging (MGH) for providing the Multi-Echo FLASH sequences used in this work.", | ||
| "HowToAcknowledge": "Cite this paper: https://www.ncbi.nlm.nih.gov/pubmed/25977808 and consider including the following message: 'This data was obtained from the OpenNeuro database. Its accession number is ds000117'", | ||
| "Funding": [ | ||
| "UK Medical Research Council (SUAG/010 RG91365), Elekta Ltd." | ||
| ], | ||
| "ReferencesAndLinks": [ | ||
| "https://www.ncbi.nlm.nih.gov/pubmed/25977808", | ||
| "https://openfmri.org/dataset/ds000117/", | ||
| "ftp://ftp.mrc-cbu.cam.ac.uk/personal/rik.henson/wakemandg_hensonrn/Publications/" | ||
| ], | ||
| "BIDSVersion": "1.0.2", | ||
| "DatasetDOI": "10.18112/openneuro.ds000117.v1.0.4" | ||
| } |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,8 @@ | ||
| freesurfer derivatives for Brainstorm processing pipeline | ||
| http://neuroimage.usc.edu/brainstorm/Tutorials/VisualSingle | ||
|
|
||
| freesurfer VERSION: | ||
| freesurfer-x86_64-redhat-linux-gnu-stable5-20130513 | ||
|
|
||
| freesurfer OPTIONS: | ||
| recon-all |
File renamed without changes.
File renamed without changes.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
Empty file.
17 changes: 17 additions & 0 deletions
17
.../meg_derivatives/sub-01/ses-meg/meg/sub-01_ses-meg_task-facerecognition_proc-sss_meg.json
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| { | ||
| "SoftwareFilters": { | ||
| "SSS": { | ||
| "frame": "head", | ||
| "mm": [4,11,38], | ||
| "autobad": "on", | ||
| "linefreq": "50", | ||
| "hpisubt": "amp", | ||
| "movecomp": "inter", | ||
| "hpistep": "10", | ||
| "trans": "run4", | ||
| "version": "MaxFilter2.2", | ||
| "ctc": "derivatives/meg_derivatives/ct_sparse.fif", | ||
| "cal": "derivatives/meg_derivatives/sss_cal.dat" | ||
| } | ||
| } | ||
| } |
Empty file.
Empty file.
Oops, something went wrong.