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[ENH] BEP022 - Magnetic Resonance Spectroscopy #425

Merged
merged 41 commits into from
Aug 29, 2024
Merged

[ENH] BEP022 - Magnetic Resonance Spectroscopy #425

merged 41 commits into from
Aug 29, 2024

Commits on Jan 21, 2024

  1. Update 2024-01-20

    @markmikkelsen
    markmikkelsen committed Jan 21, 2024
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Commits on Jan 28, 2024

  1. Update participants.json files

    @markmikkelsen
    markmikkelsen committed Jan 28, 2024
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Commits on Feb 8, 2024

  1. Remove .m files from MRS datasets

    @markmikkelsen
    markmikkelsen committed Feb 8, 2024
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  2. Update *_events.tsv files in mrs_fmrs/

    @markmikkelsen
    markmikkelsen committed Feb 8, 2024
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Commits on Feb 10, 2024

  1. Update dataset_description.json files for MRS datasets

    @markmikkelsen
    markmikkelsen committed Feb 10, 2024
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Commits on Feb 14, 2024

  1. Remove two leftover source data files from mrs_biggaba/

    @markmikkelsen
    markmikkelsen committed Feb 14, 2024
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  2. Update README.md files for MRS datasets

    @markmikkelsen
    markmikkelsen committed Feb 14, 2024
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Commits on Feb 25, 2024

  1. Update README.md files for mrs_2dmrsi and mrs_biggaba

    @markmikkelsen
    markmikkelsen committed Feb 25, 2024
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Commits on Feb 27, 2024

  1. Update mrs_biggaba/

    @markmikkelsen
    markmikkelsen committed Feb 27, 2024
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  2. Correct filename

    @markmikkelsen
    markmikkelsen committed Feb 27, 2024
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  3. Update dataset_listing.tsv

    @markmikkelsen
    markmikkelsen committed Feb 27, 2024
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  4. Merge branch 'master' into bep022

    @markmikkelsen
    markmikkelsen committed Feb 27, 2024
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Commits on Apr 13, 2024

  1. Update example MRS ref data suffices 

    - Change suffix from `ref` to `mrsref` where applicable
    @markmikkelsen
    markmikkelsen committed Apr 13, 2024
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  2. Update ref to mrsref 

    - Amend dataset_listing.tsv and README.md
    @markmikkelsen
    markmikkelsen committed Apr 13, 2024
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Commits on May 3, 2024

  1. Updates to match master branch

    @markmikkelsen
    markmikkelsen committed May 3, 2024
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  2. Merge branch 'master' into bep022

    @markmikkelsen
    markmikkelsen committed May 3, 2024
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Commits on May 4, 2024

  1. fix listing

    @Remi-Gau
    Remi-Gau committed May 4, 2024
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  2. update ignore list code spell

    @Remi-Gau
    Remi-Gau committed May 4, 2024
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  3. fix tables in README

    @Remi-Gau
    Remi-Gau committed May 4, 2024
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  4. lowercase for codespell

    @Remi-Gau
    Remi-Gau committed May 4, 2024
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Commits on May 31, 2024

  1. Add .json sidecars to the mrs_fmrs/ subjects' datasets

    @markmikkelsen
    markmikkelsen committed May 31, 2024
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  2. Merge branch 'bids-standard:master' into bep022

    @markmikkelsen
    markmikkelsen committed May 31, 2024
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Commits on Jun 3, 2024

  1. Update mrs_fmrs/README.md

    @markmikkelsen
    markmikkelsen committed Jun 3, 2024
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Commits on Jun 6, 2024

  1. Update mrs_2dmrisi/README.md

    @markmikkelsen
    markmikkelsen committed Jun 6, 2024
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Commits on Jul 25, 2024

  1. Merge remote-tracking branch 'upstream/master' into bep022

    @effigies
    effigies committed Jul 25, 2024
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  2. RUN: python tools/print_dataset_listing.py with pybids 0.16.5.post0.dev9

    @effigies
    effigies committed Jul 25, 2024
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  3. CI: Use a draft schema for validation

    @effigies
    effigies committed Jul 25, 2024
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Commits on Jul 30, 2024

  1. Merge branch 'master' into bep022

    @effigies
    effigies committed Jul 30, 2024
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Commits on Aug 7, 2024

  1. Merge branch 'master' into bep022

    @effigies
    effigies committed Aug 7, 2024
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  2. fix: Update type of SpectrometerFrequency and ResonantNucleus 

    for MRSI in mrs_{2dmrsi,biggaba}/sub-*/mrs/*.json; do
    jq '.SpectrometerFrequency = [.SpectrometerFrequency] | .ResonantNucleus = [.ResonantNucleus]' $MRSI \
    | sponge $MRSI;
done
npx prettier -w mrs_2dmrsi/sub-*/mrs/*.json
npx prettier --tab-width 4 -w mrs_biggabba/sub-*/mrs/*.json
    @effigies
    effigies committed Aug 7, 2024
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  3. fix: Schema validator installation URL

    @effigies
    effigies committed Aug 7, 2024
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  4. chore(ci): Update BIDS_SCHEMA URL

    @effigies
    effigies committed Aug 7, 2024
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Commits on Aug 13, 2024

  1. fix(json): Convert MagneticFieldStrength strings to numbers

    @effigies
    effigies committed Aug 13, 2024
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Commits on Aug 27, 2024

  1. Merge remote-tracking branch 'upstream/master' into bep022

    @effigies
    effigies committed Aug 27, 2024
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  2. CI: Update schema/validator URLs

    @effigies
    effigies committed Aug 27, 2024
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  3. CI: Skip MRS validation for legacy validator

    @effigies
    effigies committed Aug 27, 2024
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  4. chore(ci): Fix conditions and shell

    @effigies
    effigies committed Aug 27, 2024
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  5. Merge branch 'master' into bep022

    @effigies
    effigies committed Aug 27, 2024
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  6. fix: Remove "WaterSuppresionTechnique": null

    @effigies
    effigies committed Aug 27, 2024
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  7. Update .github/workflows/validate_datasets.yml

    @effigies
    effigies committed Aug 27, 2024
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Commits on Aug 28, 2024

  1. Update README/dataset_listing.tsv

    @effigies
    effigies committed Aug 28, 2024
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