[ENH] Clarify meaning of raw vs derivative datasets #1537

CPernet · 2023-06-30T12:46:15Z

following the BIDS derivatives meeting

-closes #1523

follow the BIDS derivatives meeting

for more information, see https://pre-commit.ci

codecov · 2023-06-30T12:51:32Z

Codecov Report

Patch and project coverage have no change.

Comparison is base (8c9fa11) 87.83% compared to head (583590a) 87.83%.

❗ Current head 583590a differs from pull request most recent head 915aa3e. Consider uploading reports for the commit 915aa3e to get more accurate results

Additional details and impacted files

@@           Coverage Diff           @@
##           master    #1537   +/-   ##
=======================================
  Coverage   87.83%   87.83%           
=======================================
  Files          16       16           
  Lines        1356     1356           
=======================================
  Hits         1191     1191           
  Misses        165      165

☔ View full report in Codecov by Sentry.
📢 Do you have feedback about the report comment? Let us know in this issue.

src/derivatives/introduction.md

Co-authored-by: Yaroslav Halchenko <debian@onerussian.com>

CPernet · 2023-06-30T13:58:59Z

I was preparing that in the guideline

A defaced T1w image can be derived from a BIDS datasets and is thus under derivatives

sub-01/anat/sub-01_T1w.nii.gz
derivatives/sub-01/anat/sub-01_desc-defaced_T1w.nii.gz

A defaced T1w image can be made during the curation process and is thus under raw

/sub-01/anat/sub-01_desc-defaced_T1w.nii.gz

yarikoptic · 2023-06-30T14:59:04Z

A defaced T1w image can be derived from a BIDS datasets and is thus under derivatives
sub-01/anat/sub-01_T1w.nii.gz
derivatives/sub-01/anat/sub-01_desc-defaced_T1w.nii.gz

when above would be used?

I would expect along your:

A defaced T1w image can be made during the curation process and is thus under raw

/sub-01/anat/sub-01_desc-defaced_T1w.nii.gz

to be

sub-01/anat/sub-01_desc-defaced_T1w.nii.gz
sourcedata/private/sub-01/anat/sub-01_T1w.nii.gz

or alike with sourcedata/private not being shared publicly, with _desc-defaced to have a clear indicator that it is defaced, with descriptions.tsv possibly describing briefly "how" (attn @robertoostenveld) and even .prov.jsonld somewhere (attn @cmaumet) giving details. ATM what we have is that all T1s in openneuro are defaced AFAIK and only 3 datasets have indicators about that with _rec- (_desc is indeed more appropriate if not done on scanner, then _proc -- ref #65 and #105) being abused for that purpose:

❯ cat T1ws.txt| grep def
ds004192/sub-01/ses-localizer1/anat/sub-01_ses-localizer1_acq-prescannormalized_rec-pydeface_T1w.nii.gz
ds004413/sub-20712/ses-12367/anat/sub-20712_ses-12367_rec-defaced_T1w.nii.gz
ds004450/sub-20712/ses-12367/anat/sub-20712_ses-12367_rec-defaced_T1w.nii.gz

here is a full list of sample T1w names

ds000001/sub-01/anat/sub-01_T1w.nii.gz
ds000002/sub-01/anat/sub-01_T1w.nii.gz
ds000003/sub-01/anat/sub-01_T1w.nii.gz
ds000005/sub-01/anat/sub-01_T1w.nii.gz
ds000006/sub-01/ses-retest/anat/sub-01_ses-retest_T1w.nii.gz
ds000007/sub-01/anat/sub-01_T1w.nii.gz
ds000008/sub-01/anat/sub-01_T1w.nii.gz
ds000009/sub-01/anat/sub-01_T1w.nii.gz
ds000011/sub-01/anat/sub-01_T1w.nii.gz
ds000017/sub-1/ses-timepoint1/anat/sub-1_ses-timepoint1_run-0_T1w.nii.gz
ds000030/sub-10159/anat/sub-10159_T1w.nii.gz
ds000031/sub-01/ses-015/anat/sub-01_ses-015_T1w.nii.gz
ds000051/sub-01/anat/sub-01_run-01_T1w.nii.gz
ds000052/sub-01/anat/sub-01_run-1_T1w.nii.gz
ds000053/sub-001/anat/sub-001_T1w.nii.gz
ds000101/sub-01/anat/sub-01_T1w.nii.gz
ds000102/sub-01/anat/sub-01_T1w.nii.gz
ds000105/sub-1/anat/sub-1_T1w.nii.gz
ds000107/sub-01/anat/sub-01_T1w.nii.gz
ds000108/sub-01/anat/sub-01_T1w.nii.gz
ds000109/sub-01/anat/sub-01_T1w.nii.gz
ds000110/sub-01/anat/sub-01_T1w.nii.gz
ds000113/sub-01/ses-forrestgump/anat/sub-01_ses-forrestgump_T1w.nii.gz
ds000114/sub-01/ses-retest/anat/sub-01_ses-retest_T1w.nii.gz
ds000115/sub-01/anat/sub-01_T1w.nii.gz
ds000116/sub-01/anat/sub-01_T1w.nii.gz
ds000117/sub-01/ses-mri/anat/sub-01_ses-mri_acq-mprage_T1w.nii.gz
ds000119/sub-01/anat/sub-01_T1w.nii.gz
ds000120/sub-01/anat/sub-01_T1w.nii.gz
ds000121/sub-01/anat/sub-01_T1w.nii.gz
ds000133/sub-01/ses-post/anat/sub-01_ses-post_T1w.nii.gz
ds000140/sub-01/anat/sub-01_T1w.nii.gz
ds000144/sub-01/anat/sub-01_T1w.nii.gz
ds000148/sub-01/anat/sub-01_acq-axial_run-01_T1w.nii.gz
ds000149/sub-01/anat/sub-01_T1w.nii.gz
ds000157/sub-01/anat/sub-01_T1w.nii.gz
ds000158/sub-001/anat/sub-001_T1w.nii.gz
ds000164/sub-001/anat/sub-001_T1w.nii.gz
ds000168/sub-01/anat/sub-01_T1w.nii.gz
ds000170/sub-1700/anat/sub-1700_T1w.nii.gz
ds000171/sub-control01/anat/sub-control01_T1w.nii.gz
ds000172/sub-control01/anat/sub-control01_T1w.nii.gz
ds000174/sub-101/ses-BL/anat/sub-101_ses-BL_T1w.nii.gz
ds000200/sub-2001/anat/sub-2001_T1w.nii.gz
ds000201/sub-9001/ses-1/anat/sub-9001_ses-1_T1w.nii.gz
ds000202/sub-1001/anat/sub-1001_T1w.nii.gz
ds000203/sub-01/anat/sub-01_T1w.nii.gz
ds000204/sub-01/ses-2011/anat/sub-01_ses-2011_T1w.nii.gz
ds000205/sub-01/anat/sub-01_T1w.nii.gz
ds000206/sub-THP0001/ses-THP0001CCF1/anat/sub-THP0001_ses-THP0001CCF1_run-01_T1w.nii.gz
ds000208/sub-01/anat/sub-01_T1w.nii.gz
ds000210/sub-01/anat/sub-01_T1w.nii.gz
ds000212/sub-03/anat/sub-03_T1w.nii.gz
ds000213/sub-01/anat/sub-01_T1w.nii.gz
ds000214/sub-EESS001/anat/sub-EESS001_T1w.nii.gz
ds000216/sub-01/anat/sub-01_T1w.nii.gz
ds000217/sub-Exp1s01/anat/sub-Exp1s01_T1w.nii.gz
ds000218/sub-01/anat/sub-01_T1w.nii.gz
ds000219/sub-01/anat/sub-01_T1w.nii.gz
ds000220/sub-control01/ses-1/anat/sub-control01_ses-1_T1w.nii.gz
ds000221/sub-010001/ses-02/anat/sub-010001_ses-02_acq-mp2rage_T1w.nii.gz
ds000222/sub-3107/anat/sub-3107_T1w.nii.gz
ds000223/sub-01/anat/sub-01_T1w.nii.gz
ds000224/sub-MSC01/ses-struct01/anat/sub-MSC01_ses-struct01_run-01_T1w.nii.gz
ds000228/sub-pixar001/anat/sub-pixar001_T1w.nii.gz
ds000229/sub-01/anat/sub-01_T1w.nii.gz
ds000231/sub-01/anat/sub-01_T1w.nii.gz
ds000232/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds000233/sub-rid000001/anat/sub-rid000001_T1w.nii.gz
ds000234/sub-01/anat/sub-01_T1w.nii.gz
ds000235/sub-01/anat/sub-01_T1w.nii.gz
ds000236/sub-01/anat/sub-01_T1w.nii.gz
ds000237/sub-01/anat/sub-01_T1w.nii.gz
ds000238/sub-01/anat/sub-01_T1w.nii.gz
ds000239/sub-01/anat/sub-01_run-01_T1w.nii.gz
ds000240/sub-01/anat/sub-01_T1w.nii.gz
ds000241/sub-00/anat/sub-00_T1w.nii.gz
ds000243/sub-001/anat/sub-001_T1w.nii.gz
ds000244/sub-01/ses-00/anat/sub-01_ses-00_T1w.nii.gz
ds000245/sub-CTL01/anat/sub-CTL01_T1w.nii.gz
ds000246/sub-0001/anat/sub-0001_T1w.nii.gz
ds000247/sub-0002/ses-01/anat/sub-0002_ses-01_T1w.nii.gz
ds000248/sub-01/anat/sub-01_T1w.nii.gz
ds000249/sub-01/anat/sub-01_T1w.nii.gz
ds000253/sub-01/anat/sub-01_T1w.nii.gz
ds000254/BOLD for task-induced functional MRI/sub-01/anat/sub-01_T1w.nii.gz
ds000255/sub-01/ses-anat/anat/sub-01_ses-anat_T1w.nii.gz
ds000256/sub-CTS200/anat/sub-CTS200_T1w.nii.gz
ds000258/sub-04570/anat/sub-04570_T1w.nii.gz
ds001019/sub-01/anat/sub-01_T1w.nii.gz
ds001021/sub-A00008326/ses-DS2/anat/sub-A00008326_ses-DS2_T1w.nii.gz
ds001037/sub-CG/anat/sub-CG_T1w.nii.gz
ds001105/sub-001/anat/sub-001_T1w.nii.gz
ds001110/sub-01/anat/sub-01_T1w.nii.gz
ds001131/sub-01/anat/sub-01_T1w.nii.gz
ds001132/sub-01/anat/sub-01_T1w.nii.gz
ds001145/sub-01/anat/sub-01_T1w.nii.gz
ds001161/sub-22/anat/sub-22_run-01_T1w.nii.gz
ds001167/sub-19/anat/sub-19_run-01_T1w.nii.gz
ds001168/sub-01/ses-1/anat/sub-01_ses-1_T1w.nii.gz
ds001178/sub-kate000/anat/sub-kate000_T1w.nii.gz
ds001218/sub-002/anat/sub-002_T1w.nii.gz
ds001226/sub-CON01/ses-preop/anat/sub-CON01_ses-preop_T1w.nii.gz
ds001228/sub-02/anat/sub-02_T1w.nii.gz
ds001229/sub-01/anat/sub-01_T1w.nii.gz
ds001232/sub-01/anat/sub-01_T1w.nii.gz
ds001233/sub-01/ses-pre/anat/sub-01_ses-pre_T1w.nii.gz
ds001241/sub-01/anat/sub-01_T1w.nii.gz
ds001242/sub-01/anat/.bidsignore_sub-01_melanin_T1w.nii.gz
ds001246/sub-01/ses-anatomy/anat/sub-01_ses-anatomy_T1w.nii.gz
ds001247/sub-1/anat/sub-1_T1w.nii.gz
ds001297/sub-01/anat/sub-01_T1w.nii.gz
ds001299/sub-02003/ses-01/anat/sub-02003_ses-01_run-01_T1w.nii.gz
ds001302/sub-02/anat/sub-02_T1w.nii.gz
ds001306/sub-02/anat/sub-02_T1w.nii.gz
ds001338/sub-tb2994/anat/sub-tb2994_T1w.nii.gz
ds001344/sub-001/ses-scan1/anat/sub-001_ses-scan1_T1w.nii.gz
ds001345/sub-01/anat/sub-01_T1w.nii.gz
ds001353/sub-8107/anat/sub-8107_run-01_T1w.nii.gz
ds001354/sub-cntrl01/anat/sub-cntrl01_T1w.nii.gz
ds001357/sub-001/anat/sub-001_T1w.nii.gz
ds001365/sub-01/anat/sub-01_T1w.nii.gz
ds001371/sub-M80301092/anat/sub-M80301092_T1w.nii.gz
ds001378/sub-SCA201/ses-01/anat/sub-SCA201_ses-01_T1w.nii.gz
ds001379/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds001386/sub-01/anat/sub-01_T1w.nii.gz
ds001399/sub-MOCCAG001/ses-01/anat/sub-MOCCAG001_ses-01_T1w.nii.gz
ds001408/sub-NF01/ses-1preEEG/anat/sub-NF01_ses-1preEEG_T1w.nii.gz
ds001415/sub-01/anat/sub-01_T1w.nii.gz
ds001417/sub-study002/ses-after/anat/sub-study002_ses-after_T1w.nii.gz
ds001419/sub-01/anat/sub-01_T1w.nii.gz
ds001430/sub-01/anat/sub-01_T1w.nii.gz
ds001439/sub-04/anat/sub-04_T1w.nii.gz
ds001454/sub-01/ses-1/anat/sub-01_ses-1_T1w.nii.gz
ds001482/sub-401/anat/sub-401_T1w.nii.gz
ds001486/sub-001/ses-T1/anat/sub-001_ses-T1_T1w.nii.gz
ds001491/sub-01/anat/sub-01_T1w.nii.gz
ds001497/sub-01/anat/sub-01_T1w.nii.gz
ds001499/sub-CSI1/ses-16/anat/sub-CSI1_ses-16_run-01_T1w.nii.gz
ds001506/sub-01/ses-anatomy/anat/sub-01_ses-anatomy_T1w.nii.gz
ds001510/sub-01/anat/sub-01_T1w.nii.gz
ds001511/sub-sid000001/anat/sub-sid000001_T1w.nii.gz
ds001517/sub-01/anat/sub-01_T1w.nii.gz
ds001521/sub-01/anat/sub-01_T1w.nii.gz
ds001534/sub-01/anat/sub-01_T1w.nii.gz
ds001545/sub-01/anat/sub-01_T1w.nii.gz
ds001551/sub-0055/anat/sub-0055_T1w.nii.gz
ds001553/sub-001/ses-01/anat/sub-001_ses-01_run-001_T1w.nii.gz
ds001554/sub-01/anat/sub-01_T1w.nii.gz
ds001555/sub-001/ses-01/anat/sub-001_ses-01_acq-MPRAGE_run-001_T1w.nii.gz
ds001566/sub-01/anat/sub-01_T1w.nii.gz
ds001576/sub-01/anat/sub-01_T1w.nii.gz
ds001583/sub-SS30/anat/sub-SS30_T1w.nii.gz
ds001590/sub-01/anat/sub-01_T1w.nii.gz
ds001595/sub-1/anat/sub-1_T1w.nii.gz
ds001597/sub-01/ses-pre/anat/sub-01_ses-pre_T1w.nii.gz
ds001600/sub-1/anat/sub-1_T1w.nii.gz
ds001607/sub-01/anat/sub-01_T1w.nii.gz
ds001608/sub-01/anat/sub-01_T1w.nii.gz
ds001612/sub-01/anat/sub-01_T1w.nii.gz
ds001614/sub-01/anat/sub-01_T1w.nii.gz
ds001619/sub-M80303814/anat/sub-M80303814_ce-echo1_T1w.nii.gz
ds001621/sub-01/anat/sub-01_T1w.nii.gz
ds001634/sub-01/anat/sub-01_T1w.nii.gz
ds001635/sub-01/anat/sub-01_T1w.nii.gz
ds001715/sub-01/anat/sub-01_T1w.nii.gz
ds001722/sub-01/anat/sub-01_T1w.nii.gz
ds001728/sub-01/anat/sub-01_T1w.nii.gz
ds001734/sub-001/anat/sub-001_T1w.nii.gz
ds001740/sub-01/anat/sub-01_T1w.nii.gz
ds001743/sub-01/anat/sub-01_T1w.nii.gz
ds001745/sub-01/anat/sub-01_T1w.nii.gz
ds001747/sub-2975/anat/sub-2975_run-01_T1w.nii.gz
ds001748/sub-adult01/anat/sub-adult01_T1w.nii.gz
ds001751/sub-01/anat/sub-01_T1w.nii.gz
ds001761/sub-01/ses-01/anat/sub-01_ses-01_acq-01_T1w.nii.gz
ds001762/sub-01/anat/sub-01_T1w.nii.gz
ds001771/sub-03/anat/sub-03_T1w.nii.gz
ds001775/sub-01/anat/sub-01_T1w.nii.gz
ds001780/sub-01/anat/sub-01_T1w.nii.gz
ds001784/sub-01/anat/sub-01_T1w.nii.gz
ds001796/bidsignore/sub-201/anat/sub-201_T1w.nii.gz
ds001814/sub-hc001/anat/sub-hc001_T1w.nii.gz
ds001818/sub-001/ses-01/anat/sub-001_ses-01_T1w.nii.gz
ds001832/sub-01/ses-0/anat/sub-01_ses-0_T1w.nii.gz
ds001838/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds001839/sub-5879027/anat/sub-5879027_T1w.nii.gz
ds001840/sub-04/anat/sub-04_T1w.nii.gz
ds001847/sub-01/anat/sub-01_T1w.nii.gz
ds001848/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds001868/sub-ecog01/ses-postimp/anat/sub-ecog01_ses-postimp_T1w.nii.gz
ds001875/sub-01/anat/sub-01_T1w.nii.gz
ds001882/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds001883/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds001894/sub-001/ses-T1/anat/sub-001_ses-T1_T1w.nii.gz
ds001907/sub-RC4101/ses-1/anat/sub-RC4101_ses-1_T1w.nii.gz
ds001912/sub-01/ses-01/anat/sub-01_ses-01_run-01_T1w.nii.gz
ds001919/sub-amu01/anat/sub-amu01_T1w.nii.gz
ds001921/sub-01/anat/sub-01_T1w.nii.gz
ds001923/sub-01/anat/sub-01_T1w.nii.gz
ds001926/sub-01/ses-day1/anat/sub-01_ses-day1_T1w.nii.gz
ds001927/sub-s001/ses-ctr/anat/sub-s001_ses-ctr_T1w.nii.gz
ds001928/sub-01/anat/sub-01_T1w.nii.gz
ds001942/sub-S01/ses-SES01/anat/sub-S01_ses-SES01_acq-ShortInv_run-01_T1w.nii.gz
ds001946/sub-01/anat/sub-01_T1w.nii.gz
ds001966/sub-01/anat/sub-01_T1w.nii.gz
ds001972/sub-0008/ses-01/anat/sub-0008_ses-01_run-01_T1w.nii.gz
ds001978/sub-0045/ses-01/anat/sub-0045_ses-01_run-01_T1w.nii.gz
ds002006/sub-02/anat/sub-02_T1w.nii.gz
ds002011/sub-01/anat/sub-01_T1w.nii.gz
ds002014/sub-01/anat/sub-01_T1w.nii.gz
ds002016/sub-ICBM2009asym/anat/sub-ICBM2009asym_rez-500um_T1w.nii.gz
ds002033/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds002041/sub-2001/anat/sub-2001_T1w.nii.gz
ds002076/sub-01/anat/sub-01_T1w.nii.gz
ds002080/sub-CON02/ses-postop/anat/sub-CON02_ses-postop_T1w.nii.gz
ds002105/sub-02/ses-a1/anat/sub-02_ses-a1_T1w.nii.gz
ds002116/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds002149/sub-001/anat/sub-001_run-01_T1w.nii.gz
ds002155/sub-05/anat/sub-05_T1w.nii.gz
ds002156/sub-23638/ses-04/anat/sub-23638_ses-04_acq-mprage_rec-ORIG_run-1_T1w.nii.gz
ds002158/sub-02/ses-001/anat/sub-02_ses-001_run-001_T1w.nii.gz
ds002165/sub-01/ses-01/anat/sub-01_ses-01_acq-FullExample_run-01_T1w.nii.gz
ds002168/sub-1425/anat/sub-1425_T1w.nii.gz
ds002169/sub-01/anat/sub-01_T1w.nii.gz
ds002185/sub-01/anat/sub-01_T1w.nii.gz
ds002207/sub-01/anat/sub-01_T1w.nii.gz
ds002236/sub-01/anat/sub-01_T1w.nii.gz
ds002237/sub-01/anat/sub-01_T1w.nii.gz
ds002241/sub-01/anat/sub-01_T1w.nii.gz
ds002242/sub-1295/anat/sub-1295_T1w.nii.gz
ds002250/sub-01/anat/sub-01_run-01_T1w.nii.gz
ds002270/sub-01/anat/sub-01_T1w.nii.gz
ds002278/sub-PILOT/ses-01/anat/sub-PILOT_ses-01_run-01_T1w.nii.gz
ds002293/sub-001/anat/sub-001_T1w.nii.gz
ds002294/sub-002/anat/sub-002_T1w.nii.gz
ds002295/sub-02/ses-anat/anat/sub-02_ses-anat_acq-memp2rage_T1w.nii.gz
ds002306/sub-01/anat/sub-01_T1w.nii.gz
ds002307/sub-Ey112/ses-1/anat/sub-Ey112_ses-1_acq-RARE_T1w.nii.gz
ds002311/sub-01/anat/sub-01_T1w.nii.gz
ds002316/sub-119/anat/sub-119_T1w.nii.gz
ds002320/sub-01/anat/sub-01_T1w.nii.gz
ds002322/sub-18/anat/sub-18_T1w.nii.gz
ds002328/sub-01/anat/sub-01_T1w.nii.gz
ds002330/sub-01/anat/sub-01_T1w.nii.gz
ds002336/sub-xp101/anat/sub-xp101_T1w.nii.gz
ds002338/sub-xp201/anat/sub-xp201_T1w.nii.gz
ds002345/sub-001/anat/sub-001_T1w.nii.gz
ds002351/sub-01/anat/sub-01_T1w.nii.gz
ds002355/sub-01/anat/sub-01_T1w.nii.gz
ds002363/sub-02/anat/sub-02_T1w.nii.gz
ds002372/sub-RTC01/ses-func01/anat/sub-RTC01_ses-func01_T1w.nii.gz
ds002382/sub-01/anat/sub-01_T1w.nii.gz
ds002393/sub-chiba750/anat/sub-chiba750_T1w.nii.gz
ds002411/sub-01/anat/sub-01_T1w.nii.gz
ds002419/sub-1358/ses-scan1/anat/sub-1358_ses-scan1_T1w.nii.gz
ds002424/sub-01/ses-T1/anat/sub-01_ses-T1_T1w.nii.gz
ds002522/sub-G104/ses-01/anat/sub-G104_ses-01_T1w.nii.gz
ds002543/sub-001/anat/sub-001_T1w.nii.gz
ds002547/sub-01/ses-1/anat/sub-01_ses-1_T1w.nii.gz
ds002550/sub-01/ses-mri/anat/sub-01_ses-mri_acq-mprage_T1w.nii.gz
ds002574/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds002578/sub-001/anat/sub-001_T1w.nii.gz
ds002596/sub-01/anat/sub-01_T1w.nii.gz
ds002602/sub-01/anat/sub-01_T1w.nii.gz
ds002603/sub-01/anat/sub-01_acq-AxialNsig1Mm1_T1w.nii.gz
ds002606/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds002609/sub-001/anat/sub-001_T1w.nii.gz
ds002614/sub-01/anat/sub-01_T1w.nii.gz
ds002634/sub-01/anat/sub-01_T1w.nii.gz
ds002643/sub-001/anat/sub-001_acq-AxialNsig1Mm1_T1w.nii.gz
ds002647/sub-101/anat/sub-101_T1w.nii.gz
ds002655/sub-3408/anat/sub-3408_T1w.nii.gz
ds002672/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds002674/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds002675/sub-c01/anat/sub-c01_T1w.nii.gz
ds002683/sub-01/anat/sub-01_T1w.nii.gz
ds002685/sub-01/ses-00/anat/sub-01_ses-00_T1w.nii.gz
ds002702/sub-01/ses-anatomicals/anat/sub-01_ses-anatomicals_run-01_T1w.nii.gz
ds002712/sub-01/anat/sub-01_T1w.nii.gz
ds002715/sub-01/ses-mri/anat/sub-01_ses-mri_run-01_T1w.nii.gz
ds002717/sub-01/anat/sub-01_T1w.nii.gz
ds002725/sub-01/anat/sub-01_T1w.nii.gz
ds002726/sub-01/anat/sub-01_T1w.nii.gz
ds002727/sub-01/anat/sub-01_T1w.nii.gz
ds002731/sub-3176/anat/sub-3176_T1w.nii.gz
ds002732/sub-01/anat/sub-01_T1w.nii.gz
ds002734/sub-02/anat/sub-02_T1w.nii.gz
ds002735/sub-01/anat/sub-01_acq-moldOFF_T1w.nii.gz
ds002737/sub-01/ses-03/anat/sub-01_ses-03_T1w.nii.gz
ds002738/sub-119/anat/sub-119_T1w.nii.gz
ds002741/sub-01/ses-mri/anat/sub-01_ses-mri_acq-mprage_T1w.nii.gz
ds002743/sub-01/anat/sub-01_T1w.nii.gz
ds002748/sub-01/anat/sub-01_T1w.nii.gz
ds002749/sub-01/ses-pre/anat/sub-01_ses-pre_T1w.nii.gz
ds002750/sub-01/anat/sub-01_T1w.nii.gz
ds002766/sub-cast2/ses-38/anat/sub-cast2_ses-38_run-1_T1w.nii.gz
ds002773/sub-001/ses-day2/anat/sub-001_ses-day2_T1w.nii.gz
ds002776/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds002785/sub-0001/anat/sub-0001_T1w.nii.gz
ds002790/sub-0001/anat/sub-0001_T1w.nii.gz
ds002793/sub-01/anat/sub-01_run-01_T1w.nii.gz
ds002797/sub-03/anat/sub-03_T1w.nii.gz
ds002809/sub-01/anat/sub-01_T1w.nii.gz
ds002813/sub-201/anat/sub-201_T1w.nii.gz
ds002814/sub-01/ses-mri/anat/sub-01_ses-mri_run-1_T1w.nii.gz
ds002835/sub-0217/anat/sub-0217_T1w.nii.gz
ds002837/sub-1/anat/sub-1_T1w.nii.gz
ds002841/sub-01/anat/sub-01_T1w.nii.gz
ds002842/sub-01/anat/sub-01_T1w.nii.gz
ds002843/sub-dmp0005/ses-scan1/anat/sub-dmp0005_ses-scan1_T1w.nii.gz
ds002848/sub-01/anat/sub-01_T1w.nii.gz
ds002862/sub-047EPKL011005/ses-1/anat/sub-047EPKL011005_ses-1_T1w.nii.gz
ds002872/sub-01/anat/sub-01_T1w.nii.gz
ds002878/sub-094BPAF1211001/ses-1/anat/sub-094BPAF1211001_ses-1_T1w.nii.gz
ds002879/sub-2500/anat/sub-2500_T1w.nii.gz
ds002886/sub-002/ses-T1/anat/sub-002_ses-T1_T1w.nii.gz
ds002894/sub-01/anat/sub-01_T1w.nii.gz
ds002898/sub-01/anat/sub-01_T1w.nii.gz
ds002905/sub-01/anat/sub-01_T1w.nii.gz
ds002936/sub-0001/ses-1/anat/sub-0001_ses-1_acq-1_run-1_T1w.nii.gz
ds002938/sub-01/anat/sub-01_T1w.nii.gz
ds002940/sub-s01/ses-01/anat/sub-s01_ses-01_T1w.nii.gz
ds002941/sub-1001/anat/sub-1001_T1w.nii.gz
ds002979/sub-016/anat/sub-016_T1w.nii.gz
ds002989/sub-0036/anat/sub-0036_T1w.nii.gz
ds002990/sub-01/anat/sub-01_T1w.nii.gz
ds002994/sub-0309/anat/sub-0309_T1w.nii.gz
ds002995/sub-007/ses-01/anat/sub-007_ses-01_T1w.nii.gz
ds003005/sub-117/anat/sub-117_T1w.nii.gz
ds003007/sub-01/ses-pre/anat/sub-01_ses-pre_T1w.nii.gz
ds003008/sub-117/anat/sub-117_T1w.nii.gz
ds003011/sub-01/ses-Y1CMH/anat/sub-01_ses-Y1CMH_run-1_T1w.nii.gz
ds003012/sub-01/anat/sub-01_T1w.nii.gz
ds003017/sub-sid000005/anat/sub-sid000005_acq-MPRAGE_T1w.nii.gz
ds003020/sub-UTS01/ses-1/anat/sub-UTS01_ses-1_T1w.nii.gz
ds003023/sub-01/anat/._sub-01_T1w.nii.gz
ds003027/sub-Na021/ses-1/anat/sub-Na021_ses-1_acq-RARE_T1w.nii.gz
ds003028/sub-1001/anat/sub-1001_T1w.nii.gz
ds003037/sub-001/ses-t0/anat/sub-001_ses-t0_T1w.nii.gz
ds003047/sub-01/ses-1/anat/sub-01_ses-1_T1w.nii.gz
ds003059/sub-001/anat/._sub-001_T1w.nii.gz
ds003076/sub-1001/anat/sub-1001_T1w.nii.gz
ds003082/sub-0001/anat/sub-0001_T1w.nii.gz
ds003083/sub-1001/anat/sub-1001_T1w.nii.gz
ds003085/sub-01/anat/sub-01_T1w.nii.gz
ds003094/sub-01/anat/sub-01_T1w.nii.gz
ds003095/sub-1004/anat/sub-1004_T1w.nii.gz
ds003097/sub-0001/anat/sub-0001_run-1_T1w.nii.gz
ds003098/sub-01/anat/sub-01_T1w.nii.gz
ds003103/sub-01/anat/sub-01_T1w.nii.gz
ds003104/sub-01/anat/sub-01_T1w.nii.gz
ds003114/sub-117/anat/sub-117_T1w.nii.gz
ds003126/sub-047EPKL011005/ses-1/anat/sub-047EPKL011005_ses-1_T1w.nii.gz
ds003136/sub-0148/ses-01/anat/sub-0148_ses-01_T1w.nii.gz
ds003145/sub-509BT/anat/sub-509BT_T1w.nii.gz
ds003146/sub-401/anat/sub-401_T1w.nii.gz
ds003148/sub-01/anat/sub-01_T1w.nii.gz
ds003151/sub-170/ses-hormoneabsent/anat/sub-170_ses-hormoneabsent_T1w.nii.gz
ds003170/sub-cm10006/anat/sub-cm10006_T1w.nii.gz
ds003171/sub-02CB/anat/sub-02CB_acq-MPRAGE_run-01_T1w.nii.gz
ds003176/sub-101DPMB041003/ses-1/anat/sub-101DPMB041003_ses-1_T1w.nii.gz
ds003192/sub-001/ses-01/anat/sub-001_ses-01_acq-inv1_T1w.nii.gz
ds003216/sub-02/ses-01/anat/sub-02_ses-01_run-010_T1w.nii.gz
ds003233/sub-s102/ses-wk1/anat/sub-s102_ses-wk1_T1w.nii.gz
ds003242/sub-SAXSISO01b/anat/sub-SAXSISO01b_T1w.nii.gz
ds003325/sub-01/anat/sub-01_T1w.nii.gz
ds003338/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds003340/sub-008/ses-01/anat/sub-008_ses-01_T1w.nii.gz
ds003342/sub-CR09/ses-action/anat/sub-CR09_ses-action_T1w.nii.gz
ds003345/sub-21134/anat/sub-21134_T1w.nii.gz
ds003346/sub-001/anat/sub-001_T1w.nii.gz
ds003357/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds003381/sub-NC232/ses-01/anat/sub-NC232_ses-01_acq-highres_run-01_T1w.nii.gz
ds003382/sub-02/anat/sub-02_run-001_T1w.nii.gz
ds003392/sub-01/anat/sub-01_T1w.nii.gz
ds003397/sub-01/anat/sub-01_run-1_T1w.nii.gz
ds003401/sub-01/anat/sub-01_T1w.nii.gz
ds003404/sub-C05/anat/sub-C05_rec-1_T1w.nii.gz
ds003416/sub-cIIs00/ses-s1Ax1/anat/sub-cIIs00_ses-s1Ax1_acq-r10x10x10_T1w.nii.gz
ds003419/sub-season101/ses-1/anat/sub-season101_ses-1_acq-MPrageHiRes_T1w.nii.gz
ds003424/sub-01/anat/sub-01_T1w.nii.gz
ds003425/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds003427/sub-03/anat/sub-03_acq-MP2RAGE_run-01_T1w.nii.gz
ds003430/sub-01/ses-anatomy/anat/sub-01_ses-anatomy_T1w.nii.gz
ds003433/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds003434/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds003436/sub-01/anat/sub-01_T1w.nii.gz
ds003437/sub-001/ses-fast/anat/sub-001_ses-fast_T1w.nii.gz
ds003438/sub-19/ses-01/anat/sub-19_ses-01_T1w.nii.gz
ds003439/sub-20/ses-01/anat/sub-20_ses-01_T1w.nii.gz
ds003440/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds003441/sub-21/ses-01/anat/sub-21_ses-01_T1w.nii.gz
ds003442/sub-23/ses-01/anat/sub-23_ses-01_T1w.nii.gz
ds003443/sub-24/ses-01/anat/sub-24_ses-01_T1w.nii.gz
ds003444/sub-25/ses-01/anat/sub-25_ses-01_T1w.nii.gz
ds003445/sub-20/ses-01/anat/sub-20_ses-01_T1w.nii.gz
ds003446/sub-13/ses-01/anat/sub-13_ses-01_T1w.nii.gz
ds003452/sub-f1031ax/ses-wave1bas/anat/sub-f1031ax_ses-wave1bas_T1w.nii.gz
ds003459/sub-202/anat/sub-202_acq-a_T1w.nii.gz
ds003465/sub-f1027ao/ses-wave1bas/anat/sub-f1027ao_ses-wave1bas_T1w.nii.gz
ds003466/sub-004/ses-01/anat/sub-004_ses-01_acq-mprage_run-01_T1w.nii.gz
ds003468/sub-AL011/ses-1/anat/sub-AL011_ses-1_acq-RARE_T1w.nii.gz
ds003469/sub-013/anat/sub-013_T1w.nii.gz
ds003470/sub-01/ses-1/anat/sub-01_ses-1_acq-mprage_run-1_T1w.nii.gz
ds003481/sub-001/anat/sub-001_T1w.nii.gz
ds003495/sub-01/ses-post/anat/sub-01_ses-post_T1w.nii.gz
ds003499/sub-103/anat/sub-103_acq-highres_run-01_T1w.nii.gz
ds003500/sub-213/anat/sub-213_acq-a_T1w.nii.gz
ds003505/sub-01/anat/sub-01_T1w.nii.gz
ds003511/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds003521/sub-sid000216/anat/sub-sid000216_acq-MPRAGE_T1w.nii.gz
ds003524/sub-s01/anat/sub-s01_T1w.nii.gz
ds003540/sub-01/anat/sub-01_T1w.nii.gz
ds003542/sub-01/anat/sub-01_T1w.nii.gz
ds003545/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds003548/sub-01/anat/sub-01_T1w.nii.gz
ds003550/sub-sc001/anat/sub-sc001_T1w.nii.gz
ds003553/sub-sc001/anat/sub-sc001_T1w.nii.gz
ds003554/sub-sc001/anat/sub-sc001_T1w.nii.gz
ds003563/sub-yv98/ses-0481/anat/sub-yv98_ses-0481_T1w.nii.gz
ds003568/sub-21111/anat/sub-21111_acq-mprage_T1w.nii.gz
ds003569/sub-01/anat/sub-01_T1w.nii.gz
ds003574/sub-01/anat/sub-01_T1w.nii.gz
ds003592/sub-01/ses-1/anat/sub-01_ses-1_T1w.nii.gz
ds003604/sub-5002/ses-5/anat/sub-5002_ses-5_acq-D1S2_T1w.nii.gz
ds003606/sub-101/anat/sub-101_T1w.nii.gz
ds003612/sub-108TUSW011001/ses-1/anat/sub-108TUSW011001_ses-1_T1w.nii.gz
ds003633/sub-01/ses-movie/anat/sub-01_ses-movie_T1w.nii.gz
ds003639/sub-NC150/ses-20190319/anat/sub-NC150_ses-20190319_acq-highres_run-01_T1w.nii.gz
ds003642/sub-025/ses-003/anat/sub-025_ses-003_T1w.nii.gz
ds003643/sub-CN001/anat/sub-CN001_T1w.nii.gz
ds003653/sub-718211/ses-01/anat/sub-718211_ses-01_T1w.nii.gz
ds003659/sub-001/ses-pilot/anat/sub-001_ses-pilot_T1w.nii.gz
ds003661/sub-01/ses-anatomy/anat/sub-01_ses-anatomy_T1w.nii.gz
ds003673/sub-pa1372/anat/sub-pa1372_T1w.nii.gz
ds003688/sub-01/ses-mri3t/anat/sub-01_ses-mri3t_run-1_T1w.nii.gz
ds003691/sub-01/ses-01/anat/sub-01_ses-01_acq-hcHighres_T1w.nii.gz
ds003696/sub-101/ses-02/anat/sub-101_ses-02_T1w.nii.gz
ds003701/sub-013/ses-01/anat/sub-013_ses-01_T1w.nii.gz
ds003707/sub-01/anat/sub-01_T1w.nii.gz
ds003709/sub-20900/ses-visit1/anat/sub-20900_ses-visit1_run-1_T1w.nii.gz
ds003711/sub-01/anat/sub-01_T1w.nii.gz
ds003714/sub-ID01/anat/sub-ID01_T1w.nii.gz
ds003717/sub-01/anat/sub-01_T1w.nii.gz
ds003721/sub-03/anat/sub-03_acq-highres_T1w.nii.gz
ds003745/sub-104/anat/sub-104_T1w.nii.gz
ds003752/sub-01/ses-ResearchAguirre1/anat/sub-01_ses-ResearchAguirre1_T1w.nii.gz
ds003758/sub-BA3550/anat/sub-BA3550_T1w.nii.gz
ds003763/sub-09113/anat/sub-09113_T1w.nii.gz
ds003768/sub-01/anat/sub-01_T1w.nii.gz
ds003770/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds003772/sub-bb914/anat/sub-bb914_T1w.nii.gz
ds003778/sub-01/anat/sub-01_T1w.nii.gz
ds003782/sub-19/anat/sub-19_run-01_T1w.nii.gz
ds003787/sub-wlsubj001/ses-anat/anat/sub-wlsubj001_ses-anat_acq-highres_run-01_T1w.nii.gz
ds003789/sub-5401/anat/sub-5401_T1w.nii.gz
ds003791/sub-01/anat/sub-01_T1w.nii.gz
ds003798/sub-CC0002/ses-core1p1/anat/sub-CC0002_ses-core1p1_run-01_T1w.nii.gz
ds003799/sub-season101/ses-1/anat/sub-season101_ses-1_acq-MPrageHiRes_T1w.nii.gz
ds003821/sub-000/ses-20101230/anat/sub-000_ses-20101230_T1w.nii.gz
ds003823/sub-5001/ses-post/anat/sub-5001_ses-post_acq-lc_T1w.nii.gz
ds003826/sub-02/anat/sub-02_T1w.nii.gz
ds003830/sub-01/anat/sub-01_T1w.nii.gz
ds003831/sub-001/anat/sub-001_T1w.nii.gz
ds003836/sub-06/anat/sub-06_T1w.nii.gz
ds003849/sub-BPD0050A/ses-01/anat/sub-BPD0050A_ses-01_run-01_T1w.nii.gz
ds003858/sub-01/anat/sub-01_T1w.nii.gz
ds003922/sub-Ab140232/ses-01/anat/sub-Ab140232_ses-01_T1w.nii.gz
ds003929/sub-414993/ses-1/anat/sub-414993_ses-1_acq-TSE_run-1_T1w.nii.gz
ds003949/sub-000/ses-20110101/anat/sub-000_ses-20110101_T1w.nii.gz
ds003950/sub-02/anat/sub-02_T1w.nii.gz
ds003965/code/tpl-MNI152NLin2009cAsym_res-02_desc-brain_T1w.nii.gz
ds003972/sub-01/anat/sub-01_T1w.nii.gz
ds003974/sub-01/anat/sub-01_T1w.nii.gz
ds003988/sub-01/anat/sub-01_T1w.nii.gz
ds003989/sub-01/ses-01/anat/sub-01_ses-01_run-1001_T1w.nii.gz
ds003990/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds003999/sub-00/ses-post/anat/sub-00_ses-post_T1w.nii.gz
ds004006/sub-01/anat/sub-01_T1w.nii.gz
ds004007/sub-01/anat/sub-01_T1w.nii.gz
ds004009/sub-01/anat/sub-01_T1w.nii.gz
ds004021/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds004024/sub-CON001/ses-mri/anat/sub-CON001_ses-mri_T1w.nii.gz
ds004042/sub-01/anat/sub-01_T1w.nii.gz
ds004044/sub-01/ses-1/anat/sub-01_ses-1_run-01_T1w.nii.gz
ds004056/sub-01/ses-01/anat/sub-01_ses-01_acq-MP2R_T1w.nii.gz
ds004065/sub-010/anat/sub-010_T1w.nii.gz
ds004073/sub-BAN01/anat/sub-BAN01_T1w.nii.gz
ds004078/sub-01/anat/sub-01_run-01_T1w.nii.gz
ds004085/sub-1/anat/sub-1_T1w.nii.gz
ds004086/sub-002/anat/sub-002_T1w.nii.gz
ds004091/sub-001/ses-03/anat/sub-001_ses-03_acq-ADNI_run-1_T1w.nii.gz
ds004094/sub-100/anat/sub-100_T1w.nii.gz
ds004097/sub-NDARDD890AYU/ses-01/anat/sub-NDARDD890AYU_ses-01_T1w.nii.gz
ds004101/sub-09114/ses-1pre/anat/sub-09114_ses-1pre_T1w.nii.gz
ds004103/sub-s11A/anat/sub-s11A_T1w.nii.gz
ds004107/sub-mind002/ses-01/anat/sub-mind002_ses-01_T1w.nii.gz
ds004128/sub-3E6MS/anat/sub-3E6MS_T1w.nii.gz
ds004129/sub-ON01016/anat/sub-ON01016_acq-fspgr_run-01_T1w.nii.gz
ds004130/sub-ON01016/anat/sub-ON01016_acq-fspgr_run-01_T1w.nii.gz
ds004131/sub-ON01016/anat/sub-ON01016_acq-fspgr_run-01_T1w.nii.gz
ds004134/sub-s8177/ses-01/anat/sub-s8177_ses-01_T1w.nii.gz
ds004141/sub-01/ses-01/anat/sub-01_ses-01_run-01_T1w.nii.gz
ds004142/sub-01/ses-01/anat/sub-01_ses-01_run-01_T1w.nii.gz
ds004144/sub-002/anat/sub-002_T1w.nii.gz
ds004158/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds004161/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds004169/sub-0001/ses-01/anat/sub-0001_ses-01_T1w.nii.gz
ds004173/sub-000103/anat/sub-000103_acq-headmotion1_T1w.nii.gz
ds004187/sub-01/anat/sub-01_T1w.nii.gz
ds004192/sub-01/ses-localizer1/anat/sub-01_ses-localizer1_acq-prescannormalized_rec-pydeface_T1w.nii.gz
ds004194/sub-p01/ses-umcu3t01/anat/sub-p01_ses-umcu3t01_run-01_T1w.nii.gz
ds004196/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds004197/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds004199/sub-00001/anat/sub-00001_acq-iso08_T1w.nii.gz
ds004215/sourcedata/sub-ON05258/ses-01/anat/sub-ON05258_ses-01_acq-MPRAGE_rec-SCIC_T1w.nii.gz
ds004217/sub-002/anat/sub-002_T1w.nii.gz
ds004219/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds004226/sub-001/anat/sub-001_T1w.nii.gz
ds004228/sub-01/ses-01/anat/sub-01_ses-01_run-01_T1w.nii.gz
ds004230/sub-PS19/ses-baselinebrain/anat/sub-PS19_ses-baselinebrain_T1w.nii.gz
ds004241/sub-C001/anat/sub-C001_acq-MP2RAGE_run-01_T1w.nii.gz
ds004253/sub-103111/anat/sub-103111_acq-MP2RAGE_T1w.nii.gz
ds004259/sub-1/anat/sub-1_acq-11_T1w.nii.gz
ds004265/sub-01/anat/sub-01_T1w.nii.gz
ds004271/sub-001/ses-03/anat/sub-001_ses-03_acq-ADNI_run-01_T1w.nii.gz
ds004283/sub-01/ses-02/anat/sub-01_ses-02_T1w.nii.gz
ds004285/sub-01/anat/sub-01_T1w.nii.gz
ds004286/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds004288/sub-0010/anat/sub-0010_T1w.nii.gz
ds004298/sub-087/anat/sub-087_run-01_T1w.nii.gz
ds004299/sub-103/ses-1/anat/sub-103_ses-1_T1w.nii.gz
ds004301/sub-01/anat/sub-01_T1w.nii.gz
ds004302/sub-01/anat/sub-01_T1w.nii.gz
ds004312/sub-060/ses-01/anat/sub-060_ses-01_T1w.nii.gz
ds004331/sub-01/anat/sub-01_T1w.nii.gz
ds004339/sub-001/anat/sub-001_T1w.nii.gz
ds004346/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds004349/sub-1/anat/sub-1_T1w.nii.gz
ds004360/sub-101/ses-2/anat/sub-101_ses-2_T1w.nii.gz
ds004392/sub-0202/ses-01/anat/sub-0202_ses-01_T1w.nii.gz
ds004393/sub-01/anat/sub-01_T1w.nii.gz
ds004400/sub-01/anat/sub-01_T1w.nii.gz
ds004401/sub-dummy/anat/sub-dummy_T1w.nii.gz
ds004406/sub-02/ses-01/anat/sub-02_ses-01_T1w.nii.gz
ds004413/sub-20712/ses-12367/anat/sub-20712_ses-12367_rec-defaced_T1w.nii.gz
ds004440/sub-ACM07/ses-stanfordCNI/anat/sub-ACM07_ses-stanfordCNI_run-01_T1w.nii.gz
ds004443/sub-0201/ses-01/anat/sub-0201_ses-01_T1w.nii.gz
ds004450/sub-20712/ses-12367/anat/sub-20712_ses-12367_rec-defaced_T1w.nii.gz
ds004455/sub-00001/anat/sub-00001_T1w.nii.gz
ds004456/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds004466/sub-CISC13877/anat/sub-CISC13877_T1w.nii.gz
ds004470/sub-C001/anat/sub-C001_acq-MP2RAGE_run-01_T1w.nii.gz
ds004471/sub-087/anat/sub-087_run-01_T1w.nii.gz
ds004473/sub-1/anat/sub-1_T1w.nii.gz
ds004478/sub-01/anat/sub-01_T1w.nii.gz
ds004484/sub-01/anat/sub-01_T1w.nii.gz
ds004488/sub-01/ses-action01/anat/sub-01_ses-action01_run-01_T1w.nii.gz
ds004489/sub-1014/ses-1/anat/sub-1014_ses-1_T1w.nii.gz
ds004493/sub-01/anat/sub-01_T1w.nii.gz
ds004496/sub-01/ses-anat/anat/sub-01_ses-anat_run-01_T1w.nii.gz
ds004498/sub-CIMT001/ses-38659/anat/sub-CIMT001_ses-38659_run-01_T1w.nii.gz
ds004509/sub-01/ses-01/anat/sub-01_ses-01_T1w.nii.gz
ds004513/sub-s003/ses-closed/anat/sub-s003_ses-closed_T1w.nii.gz
ds004544/sub-4793/anat/sub-4793_T1w.nii.gz
ds004552/sub-01/ses-01/anat/sub-01_ses-01_run-1_T1w.nii.gz
ds004553/sub-003/anat/sub-003_T1w.nii.gz
ds004556/sub-02/anat/sub-02_acq-mprage_run-1_T1w.nii.gz
ds004557/sub-01/ses-1/anat/sub-01_ses-1_acq-mprage_run-1_T1w.nii.gz
ds004560/sub-POBHC0001/ses-17473A/anat/sub-POBHC0001_ses-17473A_acq-TI1100TR1840_run-1_T1w.nii.gz
ds004564/sub-17017/anat/sub-17017_T1w.nii.gz
ds004590/sub-01/ses-001/anat/sub-01_ses-001_T1w.nii.gz
ds004592/sub-001/ses-01/anat/sub-001_ses-01_T1w.nii.gz
ds004597/sub-01/anat/sub-01_T1w.nii.gz
ds004620/sub-M13B/ses-20230406/anat/sub-M13B_ses-20230406_T1w.nii.gz

CPernet · 2023-07-03T06:03:55Z

I'd maybe rephrase case 1 and switch cases around- as you are right this is an unlikely scenario

A defaced T1w image would typically be made during the curation process and is thus under raw

/sub-01/anat/sub-01_desc-defaced_T1w.nii.gz
sourcedata/private/sub-01/anat/sub-01_T1w.nii.gz

A defaced T1w image could also, in theory, be derived from a BIDS dataset and would thus be under derivatives

sub-01/anat/sub-01_T1w.nii.gz
derivatives/sub-01/anat/sub-01_desc-defaced_T1w.nii.gz

yarikoptic · 2023-07-05T18:37:46Z

FWIW -- the above sounds good/correct to me as what is allowable etc. (minor note: inconsistent leading /)

add examples

for more information, see https://pre-commit.ci

CPernet · 2023-07-05T18:57:25Z

cool - added these to file now ; just need another review

src/derivatives/introduction.md

CPernet · 2023-07-10T12:39:27Z

sure, looks better (and fix desc-)

Co-authored-by: Chris Markiewicz <markiewicz@stanford.edu>

src/derivatives/introduction.md

For consistency

define raw and derivatives.md

7ca422f

follow the BIDS derivatives meeting

CPernet added the derivatives label Jun 30, 2023

CPernet requested review from yarikoptic and effigies June 30, 2023 12:46

[pre-commit.ci] auto fixes from pre-commit.com hooks

38f40f3

for more information, see https://pre-commit.ci

yarikoptic reviewed Jun 30, 2023

View reviewed changes

src/derivatives/introduction.md Outdated Show resolved Hide resolved

Update src/derivatives/introduction.md

7dd3d17

Co-authored-by: Yaroslav Halchenko <debian@onerussian.com>

CPernet and others added 2 commits July 5, 2023 20:56

Update introduction.md

90b8874

add examples

[pre-commit.ci] auto fixes from pre-commit.com hooks

32b6cd4

for more information, see https://pre-commit.ci

effigies reviewed Jul 10, 2023

View reviewed changes

src/derivatives/introduction.md Outdated Show resolved Hide resolved

src/derivatives/introduction.md Outdated Show resolved Hide resolved

src/derivatives/introduction.md Outdated Show resolved Hide resolved

CPernet and others added 2 commits July 10, 2023 14:39

Update src/derivatives/introduction.md

64bd1c8

Co-authored-by: Chris Markiewicz <markiewicz@stanford.edu>

Update src/derivatives/introduction.md

583590a

Co-authored-by: Chris Markiewicz <markiewicz@stanford.edu>

effigies reviewed Jul 11, 2023

View reviewed changes

src/derivatives/introduction.md Outdated Show resolved Hide resolved

FIX: Update code fences

882a9d6

effigies approved these changes Jul 11, 2023

View reviewed changes

effigies changed the title ~~define raw and derivatives.md~~ [ENH] Clarify meaning of raw vs derivative datasets Jul 11, 2023

effigies reviewed Jul 11, 2023

View reviewed changes

src/derivatives/introduction.md Outdated Show resolved Hide resolved

FIX: folders -> directory

915aa3e

For consistency

sappelhoff approved these changes Jul 24, 2023

View reviewed changes

sappelhoff requested review from yarikoptic, ericearl and Remi-Gau July 24, 2023 14:48

CPernet merged commit 39263f1 into master Jul 24, 2023

CPernet deleted the CPernet-patch-1 branch July 24, 2023 15:49

bendhouseart pushed a commit that referenced this pull request Jul 24, 2023

[DOC] Auto-generate changelog entry for PR #1537

01be684

sappelhoff mentioned this pull request Jan 12, 2024

BEP021: Electrophysiological Derivatives #1680

Draft

4 tasks

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

[ENH] Clarify meaning of raw vs derivative datasets #1537

[ENH] Clarify meaning of raw vs derivative datasets #1537

CPernet commented Jun 30, 2023 •

edited by sappelhoff

Loading

codecov bot commented Jun 30, 2023 •

edited

Loading

CPernet commented Jun 30, 2023

yarikoptic commented Jun 30, 2023

CPernet commented Jul 3, 2023 •

edited

Loading

yarikoptic commented Jul 5, 2023

CPernet commented Jul 5, 2023

CPernet commented Jul 10, 2023

[ENH] Clarify meaning of raw vs derivative datasets #1537

[ENH] Clarify meaning of raw vs derivative datasets #1537

Conversation

CPernet commented Jun 30, 2023 • edited by sappelhoff Loading

codecov bot commented Jun 30, 2023 • edited Loading

Codecov Report

CPernet commented Jun 30, 2023

yarikoptic commented Jun 30, 2023

CPernet commented Jul 3, 2023 • edited Loading

yarikoptic commented Jul 5, 2023

CPernet commented Jul 5, 2023

CPernet commented Jul 10, 2023

CPernet commented Jun 30, 2023 •

edited by sappelhoff

Loading

codecov bot commented Jun 30, 2023 •

edited

Loading

CPernet commented Jul 3, 2023 •

edited

Loading