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[ENH] BEP001 - Quantitative MRI #508

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[ENH] BEP001 - Quantitative MRI #508

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407a31a
[CHANGE] modality_label --> suffix
agahkarakuzu Apr 22, 2020
1620c36
[REMOVE] Modality table
agahkarakuzu Apr 22, 2020
c9d91e9
[ADD] Introductory text
agahkarakuzu Apr 22, 2020
7595162
[ADD] Description abt conventional acq
agahkarakuzu Apr 22, 2020
f2138ca
[ADD] Description abt grouped scans
agahkarakuzu Apr 22, 2020
b5b655e
[ADD] Suffix entity subsection
agahkarakuzu Apr 22, 2020
3100473
[ADD] Legacy suffixes table
agahkarakuzu Apr 22, 2020
3aeb1ce
[ADD] Grouping suffix
agahkarakuzu Apr 22, 2020
984574d
[ADD] Table for grouping suffix
agahkarakuzu Apr 22, 2020
f79b2a5
[ADD] Example snippet and note
agahkarakuzu Apr 22, 2020
5b671b1
[ADD] qMRI map suffix
agahkarakuzu Apr 22, 2020
7cc7dc9
[ADD] Table for qMRI
agahkarakuzu Apr 22, 2020
63cd049
[ADD] Example snippet and note
agahkarakuzu Apr 22, 2020
82616ec
Some small textual changes
Gilles86 Apr 24, 2020
89387df
Some small textual changes
Gilles86 Apr 24, 2020
f33304d
Some small textual changes
Gilles86 Apr 24, 2020
78de563
Some textual changes
Gilles86 Apr 24, 2020
7e2f33f
Merge pull request #4 from bids-bep001/suffix_intro
agahkarakuzu Apr 30, 2020
4edb6f5
Add temporary doc for conversion
agahkarakuzu May 8, 2020
0850534
Merge remote-tracking branch 'origin/dev' into dev
agahkarakuzu May 8, 2020
86fa328
mkdoc
agahkarakuzu May 8, 2020
fd107f4
Update 09-BEP001-conversion-tmp.md
agahkarakuzu May 8, 2020
15aeaff
Merge branch 'dev' into suffix_entity
agahkarakuzu May 17, 2020
5ba9988
Merge pull request #5 from bids-bep001/suffix_entity
agahkarakuzu May 17, 2020
34b3004
[FIX] Excluded by mistake while resolving conflicts
agahkarakuzu May 17, 2020
e5420db
[FIX] Merge conflict mess up
agahkarakuzu May 17, 2020
7efaa9a
Merge branch 'dev' into suffix_grouping
agahkarakuzu May 17, 2020
c34f5a9
suggestion by @gilles86
agahkarakuzu May 17, 2020
4527b17
Reference implementations
agahkarakuzu May 17, 2020
ddd2510
Merge pull request #7 from bids-bep001/suffix_grouping
agahkarakuzu May 17, 2020
2377e7b
Merge branch 'dev' into suffix_qMRImap
agahkarakuzu May 17, 2020
4ca3aac
Merge pull request #8 from bids-bep001/suffix_qMRImap
agahkarakuzu May 17, 2020
6daed42
[FIX] Entity title
agahkarakuzu May 17, 2020
41d7959
[ADD] Appendix for quantitative MRI
agahkarakuzu May 17, 2020
e5068b3
[ENH] Entity table for qMRI
agahkarakuzu May 17, 2020
6f87c42
Merge pull request #9 from bids-bep001/qMRI_appendix
agahkarakuzu May 17, 2020
5b85050
[FIX] Typo
agahkarakuzu May 17, 2020
6a62384
PR 24 from old repository
agahkarakuzu May 17, 2020
ed739b9
Merge pull request #10 from bids-bep001/RepetitionTime
agahkarakuzu May 17, 2020
f2cb0ea
[ADD] The part entity
agahkarakuzu May 17, 2020
3d3cc62
[ADD] Additional metadata for anatomical images
agahkarakuzu May 17, 2020
f3f4656
Merge pull request #12 from bids-bep001/metadata_qMRI
agahkarakuzu May 17, 2020
3958949
[ADD] Description about symlinks for qMRI maps
agahkarakuzu May 17, 2020
913f984
Update 10-qmri.md
agahkarakuzu May 17, 2020
ae46b7a
Update 10-qmri.md
agahkarakuzu May 17, 2020
ece994b
Update 10-qmri.md
agahkarakuzu May 17, 2020
50bd7ab
Update 10-qmri.md
agahkarakuzu May 17, 2020
f863f42
[FIX] Indentation difference
agahkarakuzu May 17, 2020
e45d2fb
[FIX] Indentation differences xross md and website
agahkarakuzu May 17, 2020
7a3a121
[ADD] Echo entity
agahkarakuzu May 17, 2020
ed37219
Merge pull request #13 from bids-bep001/entity_echo
agahkarakuzu May 17, 2020
3c7d408
[ADD] Entitiy for FlipAngle
agahkarakuzu May 17, 2020
8a440ec
Merge pull request #14 from bids-bep001/entity_fa
agahkarakuzu May 17, 2020
f34fdd8
[ADD] inv entity
agahkarakuzu May 17, 2020
7a0cc02
[ADD] to template
agahkarakuzu May 17, 2020
80467c3
Merge pull request #15 from bids-bep001/entity_inv
agahkarakuzu May 17, 2020
ac788c7
[ADD] mt entity
agahkarakuzu May 17, 2020
1ae02f1
Merge branch 'dev' into entity_mt
agahkarakuzu May 17, 2020
02cecbf
Merge pull request #16 from bids-bep001/entity_mt
agahkarakuzu May 17, 2020
d7df866
Make reference in fMRI part about echoTime in structural part
Gilles86 May 18, 2020
c3dc583
Dissociate between B0 and B1 fieldmaps
Gilles86 May 18, 2020
7b1230c
Merge pull request #17 from bids-bep001/echo_ref
Gilles86 May 18, 2020
d9a848b
Merge pull request #19 from bids-bep001/fmaps
Gilles86 May 18, 2020
217f2ad
[ADD] S0map
agahkarakuzu May 19, 2020
6655efd
Merge branch 'dev' of https://github.com/bids-bep001/bids-specificati…
agahkarakuzu May 19, 2020
65ea2f6
Cleanup RF map text
agahkarakuzu May 26, 2020
39b9c1d
[ADD] RF field maps
agahkarakuzu May 26, 2020
ee586a6
[FIX] Table
agahkarakuzu May 27, 2020
ca60c07
[ADD] Reference to the apendix
agahkarakuzu May 27, 2020
8d7efc3
[CHANGE] Entity use for RB1COR
agahkarakuzu May 27, 2020
c5860cb
[MINOR] Typo
agahkarakuzu May 27, 2020
4b00fdd
Merge pull request #24 from bids-bep001/RF_fieldmaps
Gilles86 Jun 4, 2020
887e2f4
Added to qmaps
Gilles86 Jun 5, 2020
d89c8ca
Some rewording
Gilles86 Jun 5, 2020
05a7fa5
Implemented @agahkarakuzu's wording suggestion
Gilles86 Jun 8, 2020
9eedd46
Merge pull request #27 from bids-bep001/qsm
Gilles86 Jun 8, 2020
389c0a9
Added SA2RAGE B1+-mapping method to qmri appendix
Gilles86 Jun 8, 2020
cdea8b6
Some small tweaks
Gilles86 Jun 10, 2020
f79c3d5
Replace B1plusmap with TB1map and B1minusmap with RB1map
Gilles86 Jun 10, 2020
b28613f
Merge pull request #35 from bids-bep001/TB1map_RB1map
agahkarakuzu Jun 13, 2020
9a0d04b
Update 10-qmri.md
agahkarakuzu Jun 13, 2020
e3f017a
Merge branch 'dev' into new_modalities_guideline
agahkarakuzu Jun 13, 2020
5fa2439
Merge pull request #34 from bids-bep001/new_modalities_guideline
agahkarakuzu Jun 13, 2020
9834df7
[UPDATE] qMRI map generation options
agahkarakuzu Jun 13, 2020
e03a6f5
Add PDT2
agahkarakuzu Jun 13, 2020
e17c8df
[CHANGE] SA2RAGE to TB1SRGE
agahkarakuzu Jun 14, 2020
480460f
Merge branch 'dev' into sa2rage
agahkarakuzu Jun 14, 2020
69b56dd
Merge pull request #28 from bids-bep001/sa2rage
agahkarakuzu Jun 14, 2020
7950b84
[ADD] Cahnges by @ChristophePhillips
agahkarakuzu Jun 14, 2020
30dfffa
Merge pull request #38 from bids-bep001/chris_patch_TB1EPI
agahkarakuzu Jun 14, 2020
cb0cbf8
Merge pull request #37 from bids-bep001/map_type_definition
agahkarakuzu Jun 14, 2020
6f1ed2f
Update definition
agahkarakuzu Jun 14, 2020
8da7dd7
Merge branch 'dev' into entity_part
agahkarakuzu Jun 14, 2020
ab70066
Merge pull request #11 from bids-bep001/entity_part
agahkarakuzu Jun 14, 2020
f8d795f
Merge upstream/master
Gilles86 Jun 17, 2020
b5f0d50
Merge pull request #39 from bids-bep001/upstream_merge
Gilles86 Jun 17, 2020
1107519
Merge pull request #40 from bids-bep001/master
Gilles86 Jun 17, 2020
469c0cf
Some textual changes
Gilles86 Jun 17, 2020
0e16398
Added BEP-001 contributors
Gilles86 Jun 17, 2020
b93f1bf
Merge pull request #41 from bids-bep001/contributors
Gilles86 Jun 17, 2020
3fbfdb7
Some minor textual changes
Gilles86 Jun 17, 2020
a56fb1f
Merge pull request #42 from bids-bep001/textual_revisions
Gilles86 Jun 17, 2020
cd8c7e0
Insert entity table for anatomy imaging data
agahkarakuzu Jun 19, 2020
6bdae74
Fix rtd
agahkarakuzu Jun 19, 2020
ae1ee0b
Merge pull request #43 from bids-bep001/dev
Gilles86 Jun 22, 2020
173ebc0
Fix table rows
agahkarakuzu Jun 22, 2020
a446679
Replace placeholder text
agahkarakuzu Jun 22, 2020
349d58b
Fix typo
agahkarakuzu Jun 22, 2020
10a6c6a
Update src/04-modality-specific-files/01-magnetic-resonance-imaging-d…
Gilles86 Jun 23, 2020
3b4be52
Apply suggestions from code review
KirstieJane Jun 24, 2020
82c9883
Apply suggestions from code review
KirstieJane Jun 24, 2020
87473ae
Update src/04-modality-specific-files/01-magnetic-resonance-imaging-d…
Gilles86 Jun 24, 2020
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1 change: 1 addition & 0 deletions mkdocs.yml
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Expand Up @@ -48,6 +48,7 @@ nav:
- MEG file formats: 99-appendices/06-meg-file-formats.md
- MEG systems: 99-appendices/07-meg-systems.md
- Coordinate systems: 99-appendices/08-coordinate-systems.md
- qMRI: 99-appendices/09-qmri.md
- Changelog: CHANGES.md
- The BIDS Starter Kit:
- GitHub repository: https://github.com/bids-standard/bids-starter-kit
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