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[ENH] add several tools #355

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Nov 29, 2023
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53 changes: 53 additions & 0 deletions _data/tools.yml
Original file line number Diff line number Diff line change
Expand Up @@ -61,6 +61,32 @@
- R
description: Working with Brain Imaging Data Structure in R

- name: bids stats model
url: https://pypi.org/project/bsmschema/
documentation: https://bids-standard.github.io/stats-models/index.html
language:
- python
distribution:
- name: pypi
url: https://pypi.org/project/bsmschema/
description: Validate BIDS statistical model. To learn more the [BIDS stats model website](https://bids-standard.github.io/stats-models/index.html)

- name: Hierarchical Event Descriptors (HED) online tools
url: https://hedtools.org/hed
documentation: https://www.hed-resources.org
language:
- wesbite
description: Online tools for annotation, validation, summary, and assembly of event file contents and annotations.

- name: Hierarchical Event Descriptors (HED) python tools
url: https://github.com/hed-standard/hed-python
documentation: https://www.hed-resources.org
language: python
distribution:
- name: pypi
url: https://pypi.org/project/hedtools/
description: HED libraries supporting schema development as well as annotation, validation, and analysis.

- name: Brainstorm
url: http://neuroimage.usc.edu/brainstorm/
language:
Expand All @@ -84,6 +110,12 @@
- name: pypi
url: https://pypi.org/project/cubids/

- name: File mapper
url: https://github.com/DCAN-Labs/file-mapper
language:
- python
description: An easy tool to copy/move/symlink files from one directory to the other! Can be used to "convert" dataset to be BIDS compliant.

- name: GUI dataset description generator
url: https://github.com/tolik-g/BIDS
documentation:
Expand All @@ -104,6 +136,27 @@
- Python
description: collection of tools for converting magnetoencephalography (MEG) data into BIDS format, as well as some helper functions for creating the folders and metadata needed for a BIDS dataset.

- name: neurobagel annotate
url: https://annotate.neurobagel.org/
documentation: https://neurobagel.org/data_prep/
language:
- website
description: This tool allows you to create a machine readable data dictionary in .json format for a tabular phenotypic file in .tsv format ("Data table").

- name: neurobagel query
url: https://query.neurobagel.org/
documentation: https://neurobagel.org/query_tool/
language:
- website
description: Neurobagel's query tool is a web interface for searching across a BIDS datasets based on various subject clinical-demographic and imaging parameters.

- name: nipopy
url: https://github.com/neurodatascience/nipoppy
documentation: https://neurobagel.org/nipoppy/overview/
language:
- Python
description: Lightweight neuroimaging workflow manager to help with DICOM to BIDS conversion and running BIDS apps.

- name: OpenNeuro
url: http://openneuro.org
description: A free and open platform for validating and sharing BIDS-compliant data.
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