SCelVis: Easy Single-Cell Visualization

Documentation

The SCelVis documentation at ReadTheDocs.org contains comprehensive information including a Tutorial.

Movie

Installation

You can install with Pip and Bioconda or run directly via Docker.

$ pip install scelvis
# OR
$ conda install scelvis
# OR
$ docker run ghcr.io/bihealth/scelvis:0.8.8-0 scelvis --help

Look up the latest version (instead of 0.8.8-0 to use at here)

Building Docker Image

1. Push changes to Github (we need a [git tree-ish](https://stackoverflow.com/questions/4044368/what-does-tree-ish-mean-in-git), so a tag works as well as a feature branch).
2. Call GIT_TAG=tag-or-branch bash docker/build-docker.sh.
3. Run with docker run ghcr.io/bihealth/scelvis:[version]-0.
4. Push with docker push ghcr.io/bihealth/scelvis:[version]-0.