Skip to content

bioboxes/crash-test-biobox

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

19 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

A Docker image for testing biobox tools and interfaces. Provides the following biobox tasks:

  • exit-0: Returns 0 exit code without producing any files.

  • exit-1: Returns 1 exit code without producing any files.

  • exit-1-with-log: Returns 1 exit code and writes to ${METADATA}/log.txt

  • short-read-assembler: Runs as if a short read assembler such as spades or velvet. Returns a small set of contigs and a biobox.yaml.

  • quast: Runs as if the QUAST biobox were being exectuted. Returns a report.tsv with quast metrics and a biobox.yaml.

  • gaet: Runs as if the GAET biobox were being exectuted. Returns a metrics.tsv with GAET metrics and a biobox.yaml.

About

Docker image for testing biobox tool interfaces

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published