bowtie2: add linux-aarch64 build (#46423)

* bowtie2: add linux-aarch64 build Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> * bowtie2: [linux-aarch64] Git clone the third party dependencies Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org> --------- Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
bioconda · Mar 19, 2024 · 62ab5ca · 62ab5ca
1 parent ac58d6c
commit 62ab5ca
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diff --git a/recipes/bowtie2/build.sh b/recipes/bowtie2/build.sh
@@ -1,5 +1,10 @@
 #!/bin/bash
 
+# Fetch third party dependencies 
+# (Git submodules - https://github.com/BenLangmead/bowtie2/blob/a43fa6f43f54989468a294967898f85b9fe4cefa/.gitmodules)
+git clone --branch master https://github.com/simd-everywhere/simde-no-tests.git third_party/simde
+git clone https://github.com/ch4rr0/libsais third_party/libsais
+
 LDFLAGS=""
 make CXX=$CXX CPP=$CXX CC=$CC LDLIBS="-L$PREFIX/lib -lz -lzstd -ltbb -ltbbmalloc -lpthread" WITH_ZSTD=1
 

diff --git a/recipes/bowtie2/meta.yaml b/recipes/bowtie2/meta.yaml
@@ -9,7 +9,7 @@ source:
   sha256: 4ac3ece3db011322caab14678b9d80cfc7f75208cdaf0c58b24a6ea0f1a0a60e
 
 build:
-  number: 0
+  number: 1
   skip: True  # [py2k]
   run_exports:
     - {{ pin_subpackage('bowtie2', max_pin="x") }}
@@ -18,6 +18,7 @@ requirements:
   build:
     - {{ compiler('cxx') }}
     - make
+    - git
   host:
     - python
     - zlib
@@ -54,6 +55,8 @@ about:
   summary: Fast and sensitive gapped read alignment
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:bowtie2
     - doi:10.1038/nmeth.1923