Update pathogen-profiler to 4.1.0 (#46612)

* Update pathogen-profiler to 4.1.0

* update deps and shasum

---------

Co-authored-by: Jody Phelan <jody.phelan@lshtm.ac.uk>

recipes/pathogen-profiler/meta.yaml

@@ -1,6 +1,6 @@
 {% set name = "pathogen-profiler" %}
-{% set version = "4.0.0" %}
-{% set sha256 = "2f32f2c74222a6dfcf4079d4a8f9a84cf7b03a2ebe1c170f887533c60e9ac4f9" %}
+{% set version = "4.1.0" %}
+{% set sha256 = "ddf7570f46f11ea7dae48dbd2d66811f4ed9c8d1b80a3e62049369ed01f22024" %}
 
 package:
   name: {{name}}
@@ -22,7 +22,7 @@ requirements:
     - python
     - pip
   run:
-    - python >=3.7
+    - python >=3.10
     - git
     - trimmomatic
     - bwa
@@ -34,7 +34,7 @@ requirements:
     - delly >=0.8.7
     - gatk4
     - bedtools
-    - freebayes >=1.3.5,<1.3.7
+    - freebayes =1.3.6
     - samclip
     - snpeff >=5.1
     - requests
@@ -43,7 +43,6 @@ requirements:
     - openjdk >=11.0.8
     - kmc >=3.2.1
     - dsk >=2.2
-    - cryptography >=39.0.1
     - rich-argparse 
     - joblib >=1.3.0
     - pysam