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Update sativa #44990
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Update sativa #44990
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* Update keggcharter to 1.0.2 * Update meta.yaml Now put all TXTs and TSVs from "resources" folder into "share" folder. --------- Co-authored-by: João Sequeira <maildosequeira@gmail.com>
* Update conanfile.txt.patch * Bump version
* add misha version 3.7.0 (history version) * fix hash * fix compiler settings * use template variable to specify name * add run_export to lock version
* add r-misha 3.7.1 (history version) * fix: incorrect commit and hash
* Update viguno to 0.2.0 * run_exports --------- Co-authored-by: Thanh Lee <thanh.le-viet@quadram.ac.uk>
* Update recognizer to 1.10.0 * Update meta.yaml No more build.sh file * Update meta.yaml Forgot about the other TSV files * Removed build.sh --------- Co-authored-by: BiocondaBot <47040946+BiocondaBot@users.noreply.github.com>
* genoflu version 1.02 * Update meta.yaml * Update meta.yaml * https://spdx.org/licenses/GPL-3.0-or-later.html --------- Co-authored-by: Thanh Lee <thanh.le-viet@quadram.ac.uk>
* Update chromhmm to 1.25 * Update meta.yaml * Update meta.yaml * Update meta.yaml --------- Co-authored-by: Christian Brueffer <christian@brueffer.io>
* Update ColabFold to 1.5.4 * Use 1.5.5 instead, 1.5.4 had a bug * OpenMM 8.1 causes issues
* Update expam to 1.2.2.4 * add run_exports --------- Co-authored-by: joshuazhuang7 <joshua.zhuang@yahoo.com>
Co-authored-by: João Sequeira <maildosequeira@gmail.com>
multiple binaries and a wrapper scripts depending on available instruction sets.
* add strainscan recipes * add annosine2 recipes * Delete recipes/strainscan/meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml
* a round of fixes and build-skips * add some build failures * correct version for bioconductor-data-packages * add build failure for STdeconvolve * [ci run] trigger bulk run * run_exports on bioconductor-data-packages * [ci run] trigger bulk run * build failure for omnipathr * [ci run] trigger bulk run * Build important packages first * [ci run] trigger bulk run * revert to full build * [ci run] trigger bulk run * build failure files * skip iclusterplus * skip bioconductor-lpsymphony * bump bioconda-repodata-patches build number * [ci run] * build failures * next round of high priority packages * [ci run] trigger bulk run * [ci run] add dependency * [ci run] finish priority packages * re-enable full bulk * [ci run] trigger bulk run * build failures * [ci run] trigger bulk run * next round of high priority packages * [ci run] trigger bulk run * build more high priority packages * [ci run] test local channel fix * [ci run] increase workers * Try building bioconductor-geoquery (bioconda#44726) * Delete recipes/bioconductor-geoquery/build_failure.linux-64.yaml * Update meta.yaml * try fixing parsing error * [ci run] try rebuilding bioconductor-coregx (bioconda#44727) * try rebuilding bioconductor-coregx * Update meta.yaml * add opencl loading libraries - will this work * [ci run] remove a few build failure files * [ci run] Bioconductor graph (bioconda#44733) * remove build failure file * trigger build * Update meta.yaml * add patch back [ci run] * build failures * [ci run] high priority packages * bulk wiki page * [ci run] add missing packges * build failure for bioconductor-sictools * [ci run] missed one * [ci run] full run * Update build.sh * [ci run] fix dexseq * [ci run] next round of high priority packages * [ci run] missing packages * [ci run] high priority package * [ci run] build all bioconductor-bsgenome * [ci run] remove failures associated with bioconductor-bsgenome dependency * full build * use bioconda-common version * build failures: test dev version of utils * escape characters correctly * build failure for bioconductor-pics * use branch * build failure for bioconductor-inspect * try to fix build failure git range * build failure for bioconductor-distinct * use head branch * trigger build failure wf * [ci run] trigger bulk run * build failures fetch depth * build failure for biconductor-benchdamic * build failures * build failures with log * don't run build failures if last commit has ci skip * [ci skip] test build failure wiki * test build failure wiki job * [ci run] reenable record-build-failures * re-add token for build failure updates * build failures add category column * trigger wiki update * fix libsbml version for bioconductor-rsbml * build failure updates * fix bioconductor-glad * [ci run] trigger bulk run * [ci skip] add build failure record for recipe recipes/bioconductor-wppi * [ci skip] add build failure record for recipe recipes/bioconductor-gars * [ci skip] add build failure record for recipe recipes/bioconductor-ihw * [ci skip] add build failure record for recipe recipes/bioconductor-metascope * [ci skip] add build failure record for recipe recipes/bioconductor-biggr * [ci skip] add build failure record for recipe recipes/bioconductor-rmassbank * [ci skip] add build failure record for recipe recipes/bioconductor-msbackendrawfilereader * [ci skip] add build failure record for recipe recipes/bioconductor-omicsviewer * [ci skip] add build failure record for recipe recipes/bioconductor-ccfindr * [ci skip] add build failure record for recipe recipes/bioconductor-micsqtl * [ci skip] add build failure record for recipe recipes/bioconductor-fraser * [ci skip] add build failure record for recipe recipes/bioconductor-proloc * [ci skip] add build failure record for recipe recipes/bioconductor-psygenet2r * [ci skip] add build failure record for recipe recipes/bioconductor-gesper * [ci skip] add build failure record for recipe recipes/bioconductor-sctensor * [ci skip] add build failure record for recipe recipes/bioconductor-seqcna * [ci skip] add build failure record for recipe recipes/bioconductor-rcas * [ci skip] add build failure record for recipe recipes/bioconductor-inpas * [ci skip] add build failure record for recipe recipes/bioconductor-factr * [ci skip] add build failure record for recipe recipes/bioconductor-ping * [ci skip] add build failure record for recipe recipes/bioconductor-doubletrouble * [ci skip] add build failure record for recipe recipes/bioconductor-phyloprofile * [ci skip] add build failure record for recipe recipes/bioconductor-extrachips * [ci skip] add build failure record for recipe recipes/bioconductor-rmassbank * [ci skip] add build failure record for recipe recipes/bioconductor-ularcirc * [ci skip] add build failure record for recipe recipes/bioconductor-umi4cats * [ci skip] add build failure record for recipe recipes/bioconductor-chipqc * [ci skip] add build failure record for recipe recipes/bioconductor-outsplice * [ci skip] add build failure record for recipe recipes/bioconductor-rlseq * [ci skip] add build failure record for recipe recipes/bioconductor-circseqaligntk * [ci skip] add build failure record for recipe recipes/bioconductor-ritan * [ci skip] add build failure record for recipe recipes/bioconductor-guideseq * [ci skip] add build failure record for recipe recipes/bioconductor-vulcan * [ci skip] add build failure record for recipe recipes/bioconductor-singlecelltk * [ci skip] add build failure record for recipe recipes/bioconductor-scfeatures * [ci skip] add build failure record for recipe recipes/bioconductor-ihwpaper * [ci skip] add build failure record for recipe recipes/bioconductor-deconvr * [ci skip] add build failure record for recipe recipes/bioconductor-ideal * [ci skip] add build failure record for recipe recipes/bioconductor-esatac * [ci skip] add build failure record for recipe recipes/bioconductor-profileplyr * [ci skip] add build failure record for recipe recipes/bioconductor-inetgrate * [ci skip] add build failure record for recipe recipes/bioconductor-ataccogaps * [ci skip] add build failure record for recipe recipes/bioconductor-lemur * [ci skip] add build failure record for recipe recipes/bioconductor-crisprdesign * [ci skip] add build failure record for recipe recipes/bioconductor-regionreport * [ci skip] add build failure record for recipe recipes/bioconductor-motifbreakr * [ci skip] add build failure record for recipe recipes/bioconductor-snapcgh * [ci skip] add build failure record for recipe recipes/bioconductor-ping * [ci skip] add build failure record for recipe recipes/bioconductor-cageminer * [ci skip] add build failure record for recipe recipes/bioconductor-multicrispr * [ci skip] add build failure record for recipe recipes/bioconductor-xde * [ci skip] add build failure record for recipe recipes/bioconductor-affycoretools * [ci skip] add build failure record for recipe recipes/bioconductor-scpipe * Rbowtie2 (bioconda#44856) [ci run] fix rbowtie2 builds * [ci run] remove build file * [ci skip] add build failure record for recipe recipes/bioconductor-ihw * [ci skip] add build failure record for recipe recipes/bioconductor-biggr * [ci skip] add build failure record for recipe recipes/bioconductor-proloc * [ci skip] add build failure record for recipe recipes/bioconductor-rcas * [ci skip] add build failure record for recipe recipes/bioconductor-guideseq * [ci skip] add build failure record for recipe recipes/bioconductor-crisprdesign * [ci skip] remove build failure record for recipe recipes/bioconductor-affycoretools * [ci skip] add build failure record for recipe recipes/bioconductor-fraser * [ci skip] remove build failure record for recipe recipes/bioconductor-snapcgh * failure for bioconda-multirnaflow * [ci run] trigger bulk run * [ci skip] add build failure record for recipe recipes/bioconductor-ihw * [ci skip] add build failure record for recipe recipes/bioconductor-proloc * [ci skip] add build failure record for recipe recipes/bioconductor-rcas * [ci skip] add build failure record for recipe recipes/bioconductor-guideseq * [ci skip] add build failure record for recipe recipes/bioconductor-crisprdesign * [ci skip] add build failure record for recipe recipes/bioconductor-fraser * bioconductor-lpsymphony fix from master * remove build failures for finished dependencies * restore skip osx-64 * fix bioconductor-rawrr * high priority packages * [ci run] trigger bulk run * [ci skip] add build failure record for recipe recipes/bioconductor-lpsymphony * [ci skip] remove build failure record for recipe recipes/bioconductor-proloc * fix bioconductor-chemmineob * [ci run] remove failures for built dependencies * [ci skip] add build failure record for recipe recipes/bioconductor-lpsymphony * [ci run] full build * [ci skip] add build failure record for recipe recipes/bioconductor-lpsymphony * [ci skip] add build failure record for recipe recipes/bioconductor-ihw * remove easy build failures * [ci run] next round of dependencies * [ci skip] add build failure record for recipe recipes/bioconductor-pigengene * [ci skip] add build failure record for recipe recipes/bioconductor-repitools * [ci skip] add build failure record for recipe recipes/bioconductor-xde * [ci skip] add build failure record for recipe recipes/bioconductor-sctensor * [ci skip] add build failure record for recipe recipes/bioconductor-rlseq * build failure updates * [ci run] next batch of fixes * [ci skip] add build failure record for recipe recipes/bioconductor-mitoclone2 * [ci skip] add build failure record for recipe recipes/bioconductor-rlseq * [ci run] full build * [ci skip] add build failure record for recipe recipes/bioconductor-ihw * [ci skip] add build failure record for recipe recipes/bioconductor-lpsymphony * [ci run]remove failures for built dependencies * [ci skip] add build failure record for recipe recipes/bioconductor-ihw * [ci skip] add build failure record for recipe recipes/bioconductor-lpsymphony * [ci skip] add build failure record for recipe recipes/bioconductor-rlseq * [ci skip] add build failure record for recipe recipes/bioconductor-gatom * [ci run] set failures to skip * [ci run] reduce resources that are wasted * [ci skip] add build failure record for recipe recipes/bioconductor-pd.barley1 * fix accidental reverts * add GSL to bioconductor-pics * add back fix from master for omnipathr * remove build failure * [ci run] skip root nodes to spread out builds * [ci run] include more root nodes in blacklist * update build failures * [ci run] add more blacklist items and do osx build * [ci skip] add build failure record for recipe recipes/bioconductor-snapcgh * [ci skip] add build failure record for recipe recipes/bioconductor-ping * [ci skip] add build failure record for recipe recipes/bioconductor-rjmcmcnucleosomes * [ci skip] add build failure record for recipe recipes/bioconductor-mumosa * [ci skip] add build failure record for recipe recipes/bioconductor-chromscape * [ci skip] add build failure record for recipe recipes/bioconductor-scmerge * [ci skip] add build failure record for recipe recipes/bioconductor-tadcompare * fix build errors * [ci run] more skipped builds * [ci skip] add build failure record for recipe recipes/bioconductor-cghmcr * [ci skip] add build failure record for recipe recipes/bioconductor-ihwpaper * [ci skip] add build failure record for recipe recipes/bioconductor-ccpromise * [ci skip] remove build failure record for recipe recipes/bioconductor-snapcgh * [ci skip] add build failure record for recipe recipes/bioconductor-interactivedisplay * [ci run] reduce workers * [ci skip] add build failure record for recipe recipes/bioconductor-cepo * [ci skip] add build failure record for recipe recipes/bioconductor-tbsignatureprofiler * [ci run] manually distribute packages * [ci skip] add build failure record for recipe recipes/bioconductor-cocoa * [ci skip] add build failure record for recipe recipes/bioconductor-condiments * [ci skip] add build failure record for recipe recipes/bioconductor-scclassify * [ci skip] add build failure record for recipe recipes/bioconductor-enrichtf * [ci skip] add build failure record for recipe recipes/bioconductor-gcapc * [ci skip] add build failure record for recipe recipes/bioconductor-cepo * [ci skip] add build failure record for recipe recipes/bioconductor-traviz * remove build failures * remove colon that breaks yaml parsing * remove temporary bioconductor bulk skips * [ci run] remaining packages * [ci skip] add build failure record for recipe recipes/bioconductor-distinct * [ci skip] add build failure record for recipe recipes/bioconductor-enrichtf * [ci skip] add build failure record for recipe recipes/bioconductor-promise * [ci skip] add build failure record for recipe recipes/bioconductor-otubase * [ci skip] add build failure record for recipe recipes/bioconductor-cocoa * [ci skip] add build failure record for recipe recipes/bioconductor-rjmcmcnucleosomes * retry http error * [ci run] full bulk build * [ci skip] add build failure record for recipe recipes/bioconductor-deepbluer * [ci skip] remove build failure record for recipe recipes/bioconductor-meb * [ci skip] add build failure record for recipe recipes/bioconductor-distinct * [ci run] categorize failures * add bioconductor-cdi * remove old failure files * update bioconductor-reusedata to 3.18 * remove failures for dependencies that have been built * [ci run] build certain packages * bulk: update bioconductor-ccfindr and bioconductor-rjmcmcnucleosomes with gsl (bioconda#44986) * update bioconductor-ccfindr with gsl * update bioconductor-rjmcmcnucleosomes with gsl * [ci run] build updated recipes * [ci skip] add build failure record for recipe recipes/bioconductor-ccfindr * [ci skip] add build failure record for recipe recipes/bioconductor-reusedata * remove temporary changes from workflows * build got bumped in merge * remove temp files --------- Co-authored-by: Ryan Dale <ryan.dale@nih.gov> Co-authored-by: Björn Grüning <bjoern@gruenings.eu> Co-authored-by: Bjoern Gruening <bjoern.gruening@gmail.com> Co-authored-by: BiocondaBot <BiocondaBot@users.noreply.github.com>
* Update deeplc to 2.2.23 * Update deeplc to 2.2.24 * add pyopenms * Update deeplc to 2.2.25 * Update deeplc to 2.2.26 * try extended base * revert extended base --------- Co-authored-by: joshuazhuang7 <joshua.zhuang@yahoo.com> Co-authored-by: Joshua Zhuang <71105179+mencian@users.noreply.github.com>
* Add recipe for CellBender v0.3.0 * add run_exports
* Update r-seqmagick to 0.1.7 * Update meta.yaml --------- Co-authored-by: Christian Brueffer <christian@brueffer.io>
* adding aci recipe * fixed entry point typo * fix typo * matplotlib-base * url * revert url * underscore * version --------- Co-authored-by: Thanh Lee <thanh.le-viet@quadram.ac.uk>
@BiocondaBot please add label |
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Jan 24, 2024
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Recipe for the Sativa package updated, including addition of a test.
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