muscle: add linux-aarch64 build

recipes/muscle/meta.yaml

@@ -1,19 +1,21 @@
 {% set name = "muscle" %}
-{% set version = "5.1" %}
+{% set version = "5.1.0" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/rcedgar/muscle/archive/refs/tags/v{{ version }}.tar.gz
-  sha256: 091d9f8733b92ff106c2a8eb274d1e5a57960d397a2068d8638d6002e8880dab
+  url: https://github.com/rcedgar/muscle/archive/refs/tags/{{ version }}.tar.gz
+  sha256: 2bba8b06e3ccabf6465fa26f459763b2029d7e7b9596881063e3aaba60d9e87d
   patches:
-    - 0001-Replace-zero-macro-with-memset_zero.patch
-    - 0002-Move-va_start-va_end-out-of-critical-section.patch
+    - support-linux-aarch64.patch
 
 build:
-  number: 3
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
+
 
 requirements:
   build:
@@ -31,5 +33,7 @@ about:
   summary: "MUSCLE: multiple sequence alignment with high accuracy and high throughput"
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:muscle

recipes/muscle/support-linux-aarch64.patch

@@ -0,0 +1,13 @@
+diff --git i/src/myutils.h w/src/myutils.h
+index 49d28ef..8e8167e 100644
+--- i/src/myutils.h
++++ w/src/myutils.h
+@@ -11,7 +11,7 @@
+ #define TRACK_ALLOC		0
+ #define ALLOC_TOTALS	0
+
+-#if defined(__x86_64__) || defined(_M_X64) || defined(__arm64__)
++#if defined(__x86_64__) || defined(_M_X64) || defined(__arm64__) || defined(__aarch64__)
+ #define	BITS			64
+ #else
+ #define	BITS			32

recipes/pasta/meta.yaml

@@ -13,7 +13,7 @@ source:
       - mpstart.patch  # issue in OSX py38 (not in Linux nor OSX py37): RuntimeError: An attempt has been made to start a new process before the current process has finished its bootstrapping phase.
 
 build:
-  number: 0
+  number: 1
   run_exports:
     - {{ pin_subpackage('pasta', max_pin="x") }}
 
@@ -45,7 +45,7 @@ requirements:
     - raxml
     - muscle <4  # later versions expects other cmd argument names
     - mafft
-    - hmmer ==3.1b2
+    - hmmer =>3.4
     - prank
 
 test:
@@ -71,6 +71,8 @@ about:
   summary: 'An implementation of the PASTA (Practical Alignment using Sate and TrAnsitivity) algorithm'
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   skip-lints:
     # necessary, because pasta is NOT platform independent:
     # during build time, platform specific binaries for mafft/raxml/muscle/... are copied into the PREFIX/bin dir

recipes/sepp/meta.yaml

@@ -15,7 +15,7 @@ source:
       - nodeps.setup.py.patch
 
 build:
-  number: 4
+  number: 5
   run_exports:
     - {{ pin_subpackage('sepp', max_pin="x") }}
 
@@ -32,7 +32,7 @@ requirements:
     - python <=3.9
     - dendropy <=4.5.1
     - openjdk
-    - hmmer ==3.1b2
+    - hmmer =>3.4
     - pasta
     # TODO: source bundled binaries as conda packages.
     # But pplacer / guppy are not available for OSX.
@@ -54,6 +54,8 @@ about:
   summary: SATe-enabled phylogenetic placement
 
 extra:
+  additional-platforms:
+    - linux-aarch64
   identifiers:
     - biotools:sepp
   skip-lints: