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Releasing v0.8.1 with performance details
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pjotrp committed Jul 31, 2021
1 parent cdb73f5 commit 0da5f76
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12 changes: 11 additions & 1 deletion INSTALL.md
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Expand Up @@ -37,7 +37,17 @@ container with
env CC=gcc make -f Makefile.guix -j 8
make -f Makefile.guix check

Note that this also works in the emacs shell.
To make the static release:

env CC=gcc make -f Makefile.guix static

It gives some errors, but should work:

./bin/sambamba

When you only get unit tests disable them with `--DRT-testmode=run-main`

Note that this all also works in the emacs shell.

### Guix VM

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4 changes: 2 additions & 2 deletions RELEASE-NOTES.md
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@@ -1,8 +1,8 @@
## ChangeLog v0.8.1 (2020??)
## ChangeLog v0.8.1 (20210731)

+ Some FASTA unittests break when they write to disk and read after -
marked with ~version(Broken)~
+ Fix build for LDC 1.26.0 and LLVM 9.0.1
+ Fix build for LDC 1.26.0 and LLVM 9.0.1 - some speed improvement

## ChangeLog v0.8.0 (20201130)

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2 changes: 1 addition & 1 deletion VERSION
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@@ -1 +1 @@
0.8.1-pre1
0.8.1
2 changes: 1 addition & 1 deletion sambamba/main.d
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Expand Up @@ -83,7 +83,7 @@ For bug reports and feature requests see

void printVersion() {
stderr.writeln();
stderr.writeln("sambamba " ~ VERSION ~ " by Artem Tarasov and Pjotr Prins (C) 2012-2020");
stderr.writeln("sambamba " ~ VERSION ~ " by Artem Tarasov and Pjotr Prins (C) 2012-2021");
stderr.writeln(" LDC " ~ LDC_VERSION_STRING ~ " / DMD " ~ DMD_VERSION_STRING ~
" / LLVM" ~ LLVM_VERSION_STRING ~ " / bootstrap " ~ BOOTSTRAP_VERSION_STRING);
stderr.writeln();
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32 changes: 32 additions & 0 deletions test/benchmark/stats.org
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Expand Up @@ -7,6 +7,38 @@ wget ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase3/data/HG00100/alignment/HG00


** View

Processing an 841Mb BAM file.

*** AMD Ryzen 7 3700X 8-Core Processor

#+BEGIN_SRC
time ./bin/sambamba-0.8.1-pre1 HG00100.chrom20.ILLUMINA.bwa.GBR.low_coverage.20130415.bam > /dev/null

sambamba 0.8.1-pre1
by Artem Tarasov and Pjotr Prins (C) 2012-2021
LDC 1.26.0 / DMD v2.096.1 / LLVM9.0.1 / bootstrap LDC - the LLVM D compiler (0.17.6)
real 0m1.398s
user 0m16.589s
sys 0m0.240s

time ./bin/sambamba-0.8.1-pre1 sort HG00100.chrom20.ILLUMINA.bwa.GBR.low_coverage.20130415.bam

sambamba 0.8.1-pre1
by Artem Tarasov and Pjotr Prins (C) 2012-2021
LDC 1.26.0 / DMD v2.096.1 / LLVM9.0.1 / bootstrap LDC - the LLVM D compiler (0.17.6)
real 0m9.151s
user 2m5.779s
sys 0m3.101s

time ./bin/sambamba-0.8.1-pre1 markdup HG00100.chrom20.ILLUMINA.bwa.GBR.low_coverage.20130415.sorted.bam dedup.bam
by Artem Tarasov and Pjotr Prins (C) 2012-2021
LDC 1.26.0 / DMD v2.096.1 / LLVM9.0.1 / bootstrap LDC - the LLVM D compiler (0.17.6)
real 0m11.319s
user 1m47.719s
sys 0m4.070s
#+END_SRC

*** 4x Intel(R) Core(TM) i5-2520M CPU @ 2.50GHz (hyperthreaded)
**** sambamba 0.6.8-pre3

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