You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Oh, I see. If you use the real release of sambamba debug info should be off. I'll fix this at some point. If you want to use the debug version (nevertheless) don't pipe the output. Write it to a file.
pjotrp
changed the title
SAM output of CRAM file is populated with debug
Debug version: SAM output of CRAM file is populated with debug on pipe
Dec 7, 2017
The SAM output of a CRAM file is unintentionally populated with debug lines.
System version:
uname --kernel-release && cat /etc/system-release
Would return SAM format on stdout:
Looking at stderr:
The output is:
The debug line on stdout is written on this line: cram/wrappers.d#L162
Problem occurs in both Zsh and Bash.
The text was updated successfully, but these errors were encountered: