-
Notifications
You must be signed in to change notification settings - Fork 7
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
* Add initial OncoTree getter * Add oncotree homepage * linting fixes Co-authored-by: Charles Tapley Hoyt <cthoyt@gmail.com>
- Loading branch information
1 parent
a119202
commit 3a9c486
Showing
2 changed files
with
42 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,40 @@ | ||
# -*- coding: utf-8 -*- | ||
|
||
"""A getter for OncoTree.""" | ||
|
||
import requests | ||
|
||
from ..utils import Getter, VersionType | ||
|
||
|
||
__all__ = [ | ||
"OncoTreeGetter", | ||
] | ||
|
||
|
||
class OncoTreeGetter(Getter): | ||
"""A getter for OncoTree.""" | ||
|
||
bioregistry_id = "oncotree" | ||
name = "OncoTree" | ||
homepage_fmt = "http://oncotree.mskcc.org/api/tumorTypes?version=oncotree_{version}" | ||
version_type = VersionType.date | ||
date_version_fmt = "%Y-%m-%d" | ||
|
||
def get(self) -> str: | ||
"""Get the latest OncoTree version number.""" | ||
res = requests.get("http://oncotree.mskcc.org/api/versions", params={"format": "json"}) | ||
res_json = res.json() | ||
version = next( | ||
(r["release_date"] for r in res_json if r["api_identifier"] == "oncotree_latest_stable") | ||
) | ||
return version | ||
|
||
@staticmethod | ||
def homepage_version_transform(version: str) -> str: | ||
"""Reformat version value for OncoTree data URL.""" | ||
return version.replace("-", "_") | ||
|
||
|
||
if __name__ == "__main__": | ||
OncoTreeGetter.print() |