Remove some unused files #4
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| name: Profile cbds and bfo using optiprofiler, big | |
| on: | |
| # Trigger the workflow on # push or pull request | |
| push: | |
| # Trigger the workflow manually | |
| # schedule: | |
| # - cron: '0 0 */3 * *' | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| name: Profile BDS and bfo, big | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| matlab: [latest] | |
| dim: [big] | |
| with_optim_toolbox: [yes] | |
| solver: [cbds] | |
| competitor: [bfo] | |
| run_plain: [false] | |
| feature: [plain, perturbed_x0, perturbed_x0_1, perturbed_x0_10, noisy_1e-1, noisy_1e-2, noisy_1e-3, noisy_1e-4, truncated_1, truncated_2, truncated_3, truncated_4, permuted, linearly_transformed, random_nan_5, random_nan_10, random_nan_20, quantized, rotation_noisy_1e-1, rotation_noisy_1e-2, rotation_noisy_1e-3, rotation_noisy_1e-4] | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Checkout OptiProfiler | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: optiprofiler/optiprofiler | |
| ref: matlab | |
| path: optiprofiler | |
| - name: Checkout BDS | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: blockwise-direct-search/bds | |
| ref: main | |
| path: bds | |
| - name: Install Texlive | |
| run: sudo apt-get update && sudo apt-get install texlive | |
| - name: Check whether LaTeX is installed | |
| run: pdflatex --version | |
| - name: Cache MATLAB | |
| id: cache-matlab | |
| uses: actions/cache@v4.0.1 | |
| with: | |
| path: ${{ runner.tool_cache }}/MATLAB | |
| key: ${{ matrix.os }}-${{ matrix.matlab }}-${{ matrix.with_optim_toolbox }} | |
| - name: Set up MATLAB with optimization toolbox | |
| if: ${{ matrix.with_optim_toolbox == 'yes' }} | |
| uses: matlab-actions/setup-matlab@v2.1.2 | |
| with: | |
| release: ${{ matrix.matlab }} | |
| products: Optimization_Toolbox | |
| - name: Run test | |
| uses: matlab-actions/run-command@v2.1.1 | |
| with: | |
| command: | | |
| root_dir = pwd() | |
| ls | |
| % Setup optiprofiler | |
| cd(fullfile(root_dir, 'optiprofiler')); | |
| setup | |
| cd(root_dir); | |
| % Setup bds | |
| cd(fullfile(root_dir, 'bds')); | |
| setup | |
| cd(fullfile(root_dir, 'bds', 'tests', 'competitors')); | |
| addpath(pwd); | |
| % profile | |
| cd(fullfile(root_dir, 'bds', 'tests')); | |
| options = struct(); | |
| options.feature_name = '${{ matrix.feature }}'; | |
| options.solver_names = {'${{ matrix.solver }}', '${{ matrix.competitor }}'}; | |
| options.dim = '${{ matrix.dim }}'; | |
| options.run_plain = ${{ matrix.run_plain }}; | |
| profile_optiprofiler(options); | |
| cd(root_dir); | |
| cd(fullfile(root_dir, 'bds', 'tests', 'out')); | |
| ls -R | |
| cd(root_dir); | |
| - name: Change the summary file name | |
| run: | | |
| cd ./bds/tests/out | |
| ls -R | |
| find . -type f -name 'summary*.pdf' | while read -r file; do | |
| # Obtain the parent directory and name | |
| parent_dir=$(dirname "$file") | |
| parent_name=$(basename "$parent_dir") | |
| # Obtain the new name(Why the fifth underline? Because the last five parts are the time stamp) | |
| new_name=$(echo "$parent_name" | awk -F'_' '{if(NF>=5) {for(i=1;i<=NF-5;i++) printf "%s%s", $i, (i<NF-5?"_":"")} else print $0}') | |
| # Print the new name | |
| echo "New name: $new_name" | |
| # Obtain the directory name | |
| dir_name=$(dirname "$file") | |
| # Rename the file | |
| mv "$file" "$dir_name/summary_$new_name.pdf" | |
| echo "Renamed $file to $dir_name/summary_$new_name.pdf" | |
| done | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v3.1.2 | |
| with: | |
| name: profile_optiprofiler_${{ matrix.solver }}_${{ matrix.competitor }}_${{ matrix.dim }}_${{ matrix.feature }}_${{ matrix.run_plain }} | |
| path: ./bds/tests/out/** | |
| merge_artifacts: | |
| name: Merge Artifacts | |
| runs-on: ubuntu-latest | |
| needs: test | |
| permissions: | |
| actions: read | |
| contents: read | |
| steps: | |
| - name: Install PDF tools | |
| run: sudo apt-get update && sudo apt-get install -y poppler-utils | |
| - name: Download artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| path: downloaded_artifacts | |
| - name: List downloaded files | |
| run: | | |
| echo "Downloaded files:" | |
| ls -R downloaded_artifacts/ | |
| - name: Merge PDF files | |
| run: | | |
| cd downloaded_artifacts | |
| ls -R | |
| mkdir summary | |
| find . -type f -name 'summary*.pdf' -exec cp {} summary/ \; | |
| cd summary | |
| # Define keywords to search for PDF files | |
| keywords=( | |
| "plain" | |
| "noisy_1_no_rotation" | |
| "noisy_2_no_rotation" | |
| "noisy_3_no_rotation" | |
| "noisy_4_no_rotation" | |
| "rotation_noisy_1" | |
| "rotation_noisy_2" | |
| "rotation_noisy_3" | |
| "rotation_noisy_4" | |
| "permuted" | |
| "linearly_transformed" | |
| "quantized" | |
| "perturbed_x0" | |
| "random_nan_5" | |
| "random_nan_10" | |
| "random_nan_20" | |
| "truncated_1" | |
| "truncated_2" | |
| "truncated_3" | |
| "truncated_4" | |
| ) | |
| output_file="merged.pdf" | |
| declare -a pdf_files # Use an array to store PDF files | |
| # Obtain all PDF files starting with 'summary' | |
| all_pdf_files=(summary*.pdf) | |
| # Print the array content for debugging | |
| echo "Found these PDF files:" | |
| for file in "${all_pdf_files[@]}"; do | |
| echo " $file" | |
| done | |
| # Create an associative array to store keyword to file mapping | |
| declare -A keyword_to_file | |
| # Search for PDF files with keywords | |
| for keyword in "${keywords[@]}"; do | |
| echo "Searching for keyword: $keyword" | |
| for file in "${all_pdf_files[@]}"; do | |
| if [[ $file == *"$keyword"* ]]; then | |
| echo " Found file for keyword '$keyword': $file" | |
| keyword_to_file[$keyword]=$file | |
| break # Every keyword should have only one file | |
| fi | |
| done | |
| done | |
| # Clear array to store PDF files in order of keywords | |
| pdf_files=() | |
| # Add PDF files to the array in order of keywords | |
| for keyword in "${keywords[@]}"; do | |
| if [[ -n "${keyword_to_file[$keyword]}" ]]; then | |
| pdf_files+=("${keyword_to_file[$keyword]}") | |
| fi | |
| done | |
| # Print the array content for debugging | |
| echo -e "\nFiles in order of keywords:" | |
| printf '%s\n' "${pdf_files[@]}" | |
| # Print total number of files found | |
| echo -e "\nTotal files found: ${#pdf_files[@]}" | |
| # Merge PDF files | |
| if [[ ${#pdf_files[@]} -gt 0 ]]; then | |
| pdfunite "${pdf_files[@]}" "$output_file" | |
| echo "Merge successfully: $output_file" | |
| else | |
| echo "There are no PDF files to merge." | |
| echo -e "\nAll PDF files in current directory:" | |
| ls summary*.pdf | |
| fi | |
| - name: Upload merged artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: merged_profiles | |
| path: downloaded_artifacts |