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update quickstart of simulating a brain dynamics model with new APIs #364

update quickstart of simulating a brain dynamics model with new APIs

update quickstart of simulating a brain dynamics model with new APIs #364

Workflow file for this run

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: Continuous Integration
on:
push:
branches:
- '**' # matches every branch
pull_request:
branches:
- '**' # matches every branch
#on:
# push:
# branches: [ master ]
# pull_request:
# branches: [ master ]
jobs:
test_linux:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: [ "3.8", "3.9", "3.10", "3.11"]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install flake8 pytest
if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi
pip uninstall brainpy -y
python setup.py install
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 brainpy/ --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 brainpy/ --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
cd brainpy
pytest _src/
# test_linux_py37:
# runs-on: ubuntu-latest
# strategy:
# fail-fast: false
# matrix:
# python-version: ["3.7"]
#
# steps:
# - uses: actions/checkout@v2
# - name: Set up Python ${{ matrix.python-version }}
# uses: actions/setup-python@v2
# with:
# python-version: ${{ matrix.python-version }}
# - name: Install dependencies
# run: |
# python -m pip install --upgrade pip
# python -m pip install flake8 pytest
# if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi
# pip install jax==0.3.25
# pip install jaxlib==0.3.25
# pip uninstall brainpy -y
# python setup.py install
# - name: Lint with flake8
# run: |
# # stop the build if there are Python syntax errors or undefined names
# flake8 brainpy/ --count --select=E9,F63,F7,F82 --show-source --statistics
# # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
# flake8 brainpy/ --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
# - name: Test with pytest
# run: |
# cd examples
# pytest ../brainpy/
#
test_macos:
runs-on: macos-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.8", "3.9", "3.10", "3.11"]
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install flake8 pytest
if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi
pip uninstall brainpy -y
python setup.py install
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 brainpy/ --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 brainpy/ --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
cd brainpy
pytest _src/
# test_macos_py37:
# runs-on: macos-latest
# strategy:
# fail-fast: false
# matrix:
# python-version: [ "3.7" ]
#
# steps:
# - uses: actions/checkout@v2
# - name: Set up Python ${{ matrix.python-version }}
# uses: actions/setup-python@v2
# with:
# python-version: ${{ matrix.python-version }}
# - name: Install dependencies
# run: |
# python -m pip install --upgrade pip
# python -m pip install flake8 pytest
# if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi
# pip install jax==0.3.25
# pip install jaxlib==0.3.25
# pip uninstall brainpy -y
# python setup.py install
# - name: Lint with flake8
# run: |
# # stop the build if there are Python syntax errors or undefined names
# flake8 brainpy/ --count --select=E9,F63,F7,F82 --show-source --statistics
# # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
# flake8 brainpy/ --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
# - name: Test with pytest
# run: |
# cd examples
# pytest ../brainpy/
#
# test_windows:
# runs-on: windows-latest
# strategy:
# fail-fast: false
# matrix:
# python-version: ["3.8", "3.9", "3.10", "3.11"]
#
# steps:
# - uses: actions/checkout@v2
# - name: Set up Python ${{ matrix.python-version }}
# uses: actions/setup-python@v2
# with:
# python-version: ${{ matrix.python-version }}
# - name: Install dependencies
# run: |
# python -m pip install --upgrade pip
# python -m pip install flake8 pytest
# python -m pip install numpy>=1.21.0
# python -m pip install "jaxlib==0.4.11" -f https://whls.blob.core.windows.net/unstable/index.html --use-deprecated legacy-resolver
# python -m pip install jax==0.4.11
# python -m pip install -r requirements-dev.txt
# python -m pip install tqdm brainpylib
# pip uninstall brainpy -y
# python setup.py install
# - name: Lint with flake8
# run: |
# # stop the build if there are Python syntax errors or undefined names
# flake8 brainpy/ --count --select=E9,F63,F7,F82 --show-source --statistics
# # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
# flake8 brainpy/ --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
# - name: Test with pytest
# run: |
# cd brainpy
# pytest _src/
# test_windows_py37:
# runs-on: windows-latest
# strategy:
# fail-fast: false
# matrix:
# python-version: ["3.7"]
#
# steps:
# - uses: actions/checkout@v2
# - name: Set up Python ${{ matrix.python-version }}
# uses: actions/setup-python@v2
# with:
# python-version: ${{ matrix.python-version }}
# - name: Install dependencies
# run: |
# python -m pip install --upgrade pip
# python -m pip install flake8 pytest
# python -m pip install numpy>=1.21.0
# python -m pip install "jaxlib==0.3.25" -f https://whls.blob.core.windows.net/unstable/index.html --use-deprecated legacy-resolver
# python -m pip install https://github.com/google/jax/archive/refs/tags/jax-v0.3.25.tar.gz
# python -m pip install -r requirements-dev.txt
# python -m pip install tqdm brainpylib
# pip uninstall brainpy -y
# python setup.py install
# - name: Lint with flake8
# run: |
# # stop the build if there are Python syntax errors or undefined names
# flake8 brainpy/ --count --select=E9,F63,F7,F82 --show-source --statistics
# # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
# flake8 brainpy/ --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
# - name: Test with pytest
# run: |
# cd examples
# pytest ../brainpy/