add VSEARCH to github actions environment (this will bump test covera…

…ge...)
brendanf · Mar 3, 2021 · 77fd100 · 77fd100
1 parent 9ea2945
commit 77fd100
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml
@@ -118,6 +118,7 @@ jobs:
           sysreqs=$(Rscript -e 'cat("apt-get update -y && apt-get install -y", paste(gsub("apt-get install -y ", "", remotes::system_requirements("ubuntu", "20.04")), collapse = " "))')
           echo $sysreqs
           sudo -s eval "$sysreqs"
+          sudo apt-get install -y vsearch
 
       - name: Install macOS system dependencies
         if: matrix.config.os == 'macOS-latest'
@@ -136,6 +137,9 @@ jobs:
           ## For installing usethis's dependency gert
           brew install libgit2
 
+          ## For testing
+          brew install vsearch
+
       - name: Install Windows system dependencies
         if: runner.os == 'Windows'
         run: |