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brineylab

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  1. abstar abstar Public

    VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.

    Python 40 17

  2. grp-paper grp-paper Public

    Code and data used in The Great Repertoire Project

    Jupyter Notebook 29 10

  3. BALM-paper BALM-paper Public

    Jupyter Notebook 15 5

  4. antiref antiref Public

    AntiRef: reference clusters of human antibody sequences

    Jupyter Notebook 11 3

  5. abutils abutils Public

    Python 7 4

  6. scab scab Public

    Python 4 3

Repositories

Showing 10 of 16 repositories
  • jupyterhub-config Public
    brineylab/jupyterhub-config’s past year of commit activity
    Python 0 0 0 0 Updated Nov 15, 2024
  • abstar Public

    VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.

    brineylab/abstar’s past year of commit activity
    Python 40 MIT 17 4 0 Updated Nov 15, 2024
  • abutils Public
    brineylab/abutils’s past year of commit activity
    Python 7 MIT 4 0 1 Updated Nov 8, 2024
  • taq-ligase-structural-ensemble Public

    Conformational Ensembles for Taq Ligase and Human DNA Ligase I and III

    brineylab/taq-ligase-structural-ensemble’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 7, 2024
  • preferential-masking-paper Public
    brineylab/preferential-masking-paper’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 6, 2024
  • deepspeed Public
    brineylab/deepspeed’s past year of commit activity
    Python 0 0 0 0 Updated Oct 29, 2024
  • BALM Public

    BALM: baseline antiobdy language model

    brineylab/BALM’s past year of commit activity
    Python 0 GPL-3.0 2 0 0 Updated Oct 29, 2024
  • scab Public
    brineylab/scab’s past year of commit activity
    Python 4 MIT 3 1 1 Updated Oct 16, 2024
  • containers Public
    brineylab/containers’s past year of commit activity
    Dockerfile 0 2 0 0 Updated Sep 12, 2024
  • BALM-MoE Public
    brineylab/BALM-MoE’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 5, 2024
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