Merge pull request #72 from broadinstitute/cdv-change-name-load_data_…

…with_illum_csv Update cpd_analysis_pipeline.wdl
broadinstitute · Jan 19, 2023 · 8ea6bcc · 8ea6bcc
2 parents 750499b + 4121293
commit 8ea6bcc
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/pipelines/cellpainting/cpd_analysis_pipeline.wdl b/pipelines/cellpainting/cpd_analysis_pipeline.wdl
@@ -14,7 +14,7 @@ workflow cpd_analysis_pipeline {
 
     # Specify input file information
     String images_directory_gsurl
-    File load_data_csv
+    File load_data_with_illum_csv
     String illum_directory_gsurl = "${images_directory}/illum"
 
     # Cellprofiler pipeline specification
@@ -46,7 +46,7 @@ workflow cpd_analysis_pipeline {
     # Create an index to scatter
     call util.scatter_index as idx {
       input:
-        load_data_csv= load_data_csv,
+        load_data_csv= load_data_with_illum_csv,
         splitby_metadata = splitby_metadata,
     }
 
@@ -56,7 +56,7 @@ workflow cpd_analysis_pipeline {
         input:
           image_directory =  images_directory,
           illum_directory = illum_directory,
-          load_data_csv = load_data_csv,
+          load_data_csv = load_data_with_illum_csv,
           splitby_metadata = splitby_metadata,
           index = index,
       }

diff --git a/tests/cellpainting_workflow.wdl b/tests/cellpainting_workflow.wdl
@@ -92,7 +92,7 @@ workflow cellpainting_workflow {
     input:
       images_directory_gsurl = cp_illumination.images_output_directory,
       # illum_directory_gsurl = cp_illumination.illum_output_directory,
-      load_data_csv = cpd_max_projection.load_data_with_illum_csv,
+      load_data_with_illum_csv = cpd_max_projection.load_data_with_illum_csv,
       cppipe_file = analysis_cppipe_file,
       output_directory_gsurl = analysis_output_directory_gsurl,
   }
@@ -115,4 +115,4 @@ workflow cellpainting_workflow {
       output_directory_url = mining_directory_gsurl,
   }
 
-}
+}