Handle CTX_INV subtype in SVAnnotate #3769

Job	Run time
Validate script WDLs using womtools	56s
check if the environment has privileges	1s
Validate generated WDLs using womtools	13m 44s
build and push gatk docker to artifacts	23m 6s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	28m 37s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	30m 29s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	25m 36s
WDL test RUN_M2_WDL on cromwell	18m 14s
WDL test RUN_CNN_WDL on cromwell	17m 16s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	12m 56s
Java 17.0.6+10 build and test cloud	15m 56s
Java 17.0.6+10 build and test integration	32m 33s
Java 17.0.6+10 build and test unit	20m 52s
Java 17.0.6+10 test on docker integration	37m 23s
Java 17.0.6+10 test on docker unit	41m 38s
Java 17.0.6+10 test on docker variantcalling	32m 25s
Java 17.0.6+10 test on docker conda	32m 9s
	6h 23m 51s

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