Funcotator default values were using single static instances for default values. #4839
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LeeTL1220
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Jun 8, 2018
#4838) - Added flag to ease restrictions on b37 reference for chr/non-chr comparisons. This is useful for dev testing. - Added parsing of funcotation attribute using the VCF Header. Mostly used for dev testing. - VCF Datasources now have to match the alt and ref alleles to be considered a hit. - Added FuncotationMap to improve encapsulation and make rendering a bit easier. - Fixed issue with FuncotatorIntegrationTest where default values were references that were changed, thereby causing cross-test errors. - A lot of refactoring to create FuncotationMap and use that to send to OutputRenderers. - VCF and MAF will honor the canonical vs. all vs best effect. - Closes #3842 - Closes #4808 - Closes #4811 - Closes #4810 - Closes #4839
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This causes integration tests to fail.
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