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Fixes for HG38 exception and better logging. #4563

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merged 8 commits into from
Apr 6, 2018

Commits on Mar 29, 2018

  1. Added more logging functionality to better inform users.

    Fixed NullPointerException when onTraversalStart throws.
    Now logs version number information for data sources.
    Now checks minimum data sources version and requires that the user
    upgrade if the version is too old.
    jonn-smith committed Mar 29, 2018
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  2. Addressing comments.

    jonn-smith committed Mar 29, 2018
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Commits on Mar 30, 2018

  1. Refactored the spot checks into largeDataValidationTest.

    Now dbSNP uses the `All` datasource, not the `common` data source.
    
    Refactored largeDataValidationTest to use an environment variable to
    point to the test data files.
    jonn-smith committed Mar 30, 2018
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  2. Moved funcotatorValidation tests into their own group.

    funcotatorValidation tests no longer run by default.
    Need to enable these tests in jenkins.
    jonn-smith committed Mar 30, 2018
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  3. Fixing a unit test.

    Had to change the expected data because of new mappings from data source
    fields to MAF output fields.
    jonn-smith committed Mar 30, 2018
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Commits on Apr 3, 2018

  1. Minor fixes to tests.

    jonn-smith committed Apr 3, 2018
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Commits on Apr 6, 2018

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