-
Notifications
You must be signed in to change notification settings - Fork 589
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Fixes for HG38 exception and better logging. #4563
Merged
Merged
Commits on Mar 29, 2018
-
Added more logging functionality to better inform users.
Fixed NullPointerException when onTraversalStart throws. Now logs version number information for data sources. Now checks minimum data sources version and requires that the user upgrade if the version is too old.
Configuration menu - View commit details
-
Copy full SHA for 0745ea8 - Browse repository at this point
Copy the full SHA 0745ea8View commit details -
Configuration menu - View commit details
-
Copy full SHA for 5d85137 - Browse repository at this point
Copy the full SHA 5d85137View commit details -
Configuration menu - View commit details
-
Copy full SHA for 5e59201 - Browse repository at this point
Copy the full SHA 5e59201View commit details
Commits on Mar 30, 2018
-
Refactored the spot checks into largeDataValidationTest.
Now dbSNP uses the `All` datasource, not the `common` data source. Refactored largeDataValidationTest to use an environment variable to point to the test data files.
Configuration menu - View commit details
-
Copy full SHA for 34c8ceb - Browse repository at this point
Copy the full SHA 34c8cebView commit details -
Moved funcotatorValidation tests into their own group.
funcotatorValidation tests no longer run by default. Need to enable these tests in jenkins.
Configuration menu - View commit details
-
Copy full SHA for 9742487 - Browse repository at this point
Copy the full SHA 9742487View commit details -
Had to change the expected data because of new mappings from data source fields to MAF output fields.
Configuration menu - View commit details
-
Copy full SHA for fefa1d8 - Browse repository at this point
Copy the full SHA fefa1d8View commit details
Commits on Apr 3, 2018
-
Configuration menu - View commit details
-
Copy full SHA for 5360b0c - Browse repository at this point
Copy the full SHA 5360b0cView commit details
Commits on Apr 6, 2018
-
Configuration menu - View commit details
-
Copy full SHA for 4269633 - Browse repository at this point
Copy the full SHA 4269633View commit details
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.