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More funcotator fixes #4783
Merged
Merged
More funcotator fixes #4783
Commits on May 22, 2018
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- Ordering specified in the header did not match the variants and hg19/b37 flexibility was being applied to VCF datasources and inducing a lot of missed annotations. - Sanitizing funcotations in VCF. - Implemented lookahead caching and merged with master. - Added Funcotator test for clinvar and Gencode v28 in hg38 - Added funcotator test to make sure that mixed chr/no-chr GENCODE and datasources would still annotate properly for hg19. - Eased restrictions so that Gencode v28 would be recognized as a valid gtf - Added warning so that future versions of Gencode would not fail just based on the version number and warning would be emitted instead (@jonn-smith) - Altered the lookahead default value to specific for backend.
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Commits on May 23, 2018
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- Tarring other test references.
- Created a class to minimize the number of copies we make of each untarred test reference.
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Commits on May 24, 2018
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