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fixed bug for M2 GGA alleles with zero coverage #5303

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merged 1 commit into from
Oct 16, 2018
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davidbenjamin
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@takutosato here's an edge case that showed up in MC3.

"--alleles", givenAllelesVcf.getAbsolutePath());
runCommandLine(args);

int j = 5;
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remove this stray debugging line

@davidbenjamin
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@madduran This should fix the bug you saw.

@davidbenjamin davidbenjamin deleted the db_bug branch October 16, 2018 15:54
EdwardDixon pushed a commit to EdwardDixon/gatk that referenced this pull request Nov 9, 2018
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