Updated testing Gencode data sources to fully exercise test data set #5423
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Updated the run_oncotator_VCF_in.sh script to point at the new regression test data source locations by default.
- Updated `createSimpleGencodeDataSourceFromVariants.sh` to grab flanking genes as well as overlapping genes.
lbergelson
approved these changes
Nov 16, 2018
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The test Gencode data sources did not include any genes in flanking distance to the test variants. This update creates a new Gencode data source that includes such regions.
Additionally, the Gencode excision script was updated to include a flanking range defaulting to the funcotator 5' flanking defualt (5000 bases).
Fixes #5419