gave LeftAlignIndels the usual command line for output #5474
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Sounds good to me — consistency is more important than compatibility here. |
cmnbroad
approved these changes
Dec 3, 2018
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Closes #5072.
@cmnbroad Personally, I'm in favor of making the command line consistent with the rest of the GATK, regardless of backward compatibility. @vdauwera what do you say?