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The rest of the mitochondria joint calling pipeline #5673

Merged
merged 9 commits into from
Feb 15, 2019
Merged

The rest of the mitochondria joint calling pipeline #5673

merged 9 commits into from
Feb 15, 2019

Commits on Feb 13, 2019

  1. Mostly reasonable results for merging "somatic" GVCFs from other Mute… 

    …ct2 branch

Move annotations for filtering to format; update with fixed LODs
    @ldgauthier
    ldgauthier committed Feb 13, 2019
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  2. Missed some warnings

    @ldgauthier
    ldgauthier committed Feb 13, 2019
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Commits on Feb 14, 2019

  1. Address most review comments

    @ldgauthier
    ldgauthier committed Feb 14, 2019
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  2. Slight header improvement

    @ldgauthier
    ldgauthier committed Feb 14, 2019
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  3. Missed one review comment

    @ldgauthier
    ldgauthier committed Feb 14, 2019
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  4. Address Megan's comments

    @ldgauthier
    ldgauthier committed Feb 14, 2019
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Commits on Feb 15, 2019

  1. Totally do need that continue

    @ldgauthier
    ldgauthier committed Feb 15, 2019
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  2. Missing test input

    @ldgauthier
    ldgauthier committed Feb 15, 2019
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  3. Fix review suggestion I blindly followed

    @ldgauthier
    ldgauthier committed Feb 15, 2019
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