Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update haplochecker dockerfile and task to match #5760

Merged
merged 3 commits into from
Mar 7, 2019

Conversation

jsotobroad
Copy link
Contributor

Version 0.1.0 of hapolocheker has a bug with flipping the major and minor hg headers in its output. Version 0.1.2 fixes that bug so we are updating to that.

Copy link
Contributor

@meganshand meganshand left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

👍 Assuming tests pass

@codecov-io
Copy link

codecov-io commented Mar 5, 2019

Codecov Report

Merging #5760 into master will decrease coverage by 6.69%.
The diff coverage is n/a.

Impacted file tree graph

@@             Coverage Diff              @@
##             master    #5760      +/-   ##
============================================
- Coverage     86.98%   80.28%    -6.7%     
+ Complexity    31864    30238    -1626     
============================================
  Files          1943     1943              
  Lines        146770   146770              
  Branches      16223    16223              
============================================
- Hits         127668   117837    -9831     
- Misses        13190    23220   +10030     
+ Partials       5912     5713     -199
Impacted Files Coverage Δ Complexity Δ
...kers/filters/VariantFiltrationIntegrationTest.java 0.82% <0%> (-99.18%) 1% <0%> (-25%)
...dorientation/CollectF1R2CountsIntegrationTest.java 0.91% <0%> (-99.09%) 1% <0%> (-12%)
.../walkers/bqsr/BaseRecalibratorIntegrationTest.java 1.03% <0%> (-98.97%) 1% <0%> (-7%)
...ers/vqsr/FilterVariantTranchesIntegrationTest.java 1.05% <0%> (-98.95%) 1% <0%> (-5%)
...s/variantutils/VariantsToTableIntegrationTest.java 1.2% <0%> (-98.8%) 1% <0%> (-20%)
...ientation/ReadOrientationModelIntegrationTest.java 1.66% <0%> (-98.34%) 1% <0%> (-5%)
...on/FindBreakpointEvidenceSparkIntegrationTest.java 1.75% <0%> (-98.25%) 1% <0%> (-6%)
...bender/tools/spark/PileupSparkIntegrationTest.java 2.04% <0%> (-97.96%) 2% <0%> (-13%)
...tute/hellbender/tools/FlagStatIntegrationTest.java 2.08% <0%> (-97.92%) 1% <0%> (-5%)
...rs/variantutils/SelectVariantsIntegrationTest.java 0.25% <0%> (-97.75%) 1% <0%> (-70%)
... and 154 more

Continue to review full report at Codecov.

Legend - Click here to learn more
Δ = absolute <relative> (impact), ø = not affected, ? = missing data
Powered by Codecov. Last update 1d6f5b3...d98f9dc. Read the comment docs.

@jsotobroad jsotobroad merged commit 5648263 into master Mar 7, 2019
@jsotobroad jsotobroad deleted the js_fix_haplochecker branch March 7, 2019 15:48
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants