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Trim per-allele FORMAT annotations and optionally retain raw AS annotations #5833

Merged
merged 8 commits into from
Mar 28, 2019
Merged

Trim per-allele FORMAT annotations and optionally retain raw AS annotations #5833

merged 8 commits into from
Mar 28, 2019

Commits on Mar 20, 2019

  1. Update A-type and R-type FORMAT annotations in GenotypeGVCFs

    @ldgauthier
    ldgauthier committed Mar 20, 2019
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Commits on Mar 22, 2019

  1. Only turn lists into lists

    @ldgauthier
    ldgauthier committed Mar 22, 2019
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  2. Add option to keep combined AS annotations, as requested in #5698

    @ldgauthier
    ldgauthier committed Mar 22, 2019
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Commits on Mar 25, 2019

  1. Fix headers for keeping raw annotations

    @ldgauthier
    ldgauthier committed Mar 25, 2019
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  2. Add test with OxoG read counts

    @ldgauthier
    ldgauthier committed Mar 25, 2019
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  3. Actually fix headers

    @ldgauthier
    ldgauthier committed Mar 25, 2019
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  4. Add expected file. :-(

    @ldgauthier
    ldgauthier committed Mar 25, 2019
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Commits on Mar 27, 2019

  1. Final final

    @ldgauthier
    ldgauthier committed Mar 27, 2019
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