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Handle CTX_INV subtype in SVAnnotate #8693

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merged 2 commits into from
Feb 15, 2024

return ArrayList from getComplexAnnotationIntervals

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Merged

Handle CTX_INV subtype in SVAnnotate #8693

return ArrayList from getComplexAnnotationIntervals
40569a7
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Codecov / codecov/project succeeded Feb 15, 2024 in 0s

86.407% (+0.000%) compared to bbc028b

View this Pull Request on Codecov

86.407% (+0.000%) compared to bbc028b

Details

Codecov Report

Merging #8693 (40569a7) into master (bbc028b) will increase coverage by 0.000%.
The diff coverage is 95.455%.

Additional details and impacted files
@@             Coverage Diff             @@
##              master     #8693   +/-   ##
===========================================
  Coverage     86.407%   86.407%           
  Complexity     39882     39882           
===========================================
  Files           2371      2371           
  Lines         187581    187596   +15     
  Branches       20531     20532    +1     
===========================================
+ Hits          162083    162096   +13     
+ Misses         18271     18270    -1     
- Partials        7227      7230    +3     
Files Coverage Δ
...ender/tools/spark/sv/utils/GATKSVVCFConstants.java 96.552% <100.000%> (+0.123%) ⬆️
...der/tools/walkers/sv/SVAnnotateEngineUnitTest.java 97.514% <100.000%> (+0.071%) ⬆️
.../hellbender/tools/walkers/sv/SVAnnotateEngine.java 90.373% <88.889%> (-0.193%) ⬇️

... and 2 files with indirect coverage changes