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dev -> staging #1365

Merged
merged 21 commits into from
Sep 9, 2024
Merged

dev -> staging #1365

merged 21 commits into from
Sep 9, 2024

Commits on Aug 14, 2024

  1. PD-2721: Add checks for empty cells (#1353)

    @aawdeh
    aawdeh authored Aug 14, 2024
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Commits on Aug 15, 2024

  1. Np add firecloud api scripts (#1358) 

    * pin all latest docker version

* add firecloud scripts

* add testing scripts
    @nikellepetrillo
    nikellepetrillo authored Aug 15, 2024
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Commits on Aug 28, 2024

  1. adding 10x wrapper function

    @ekiernan
    ekiernan committed Aug 28, 2024
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  2. fixing nhash_id variable

    @ekiernan
    ekiernan committed Aug 28, 2024
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Commits on Aug 29, 2024

  1. added h5ad output

    @ekiernan
    ekiernan committed Aug 29, 2024
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  2. adding h5ad argument to second command

    @ekiernan
    ekiernan committed Aug 29, 2024
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  3. removing temp metrics

    @ekiernan
    ekiernan committed Aug 29, 2024
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  4. Update atac.wdl

    @ekiernan
    ekiernan committed Aug 29, 2024
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  5. removing header in ATAC and starting documentation for metrics

    @ekiernan
    ekiernan committed Aug 29, 2024
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  6. added metric definitions to the library overview

    @ekiernan
    ekiernan committed Aug 29, 2024
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  7. updating Multiome documentation and outputs with new ATAC metrics

    @ekiernan
    ekiernan committed Aug 29, 2024
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  8. updated changelogs, pipeline ersions, and final outputs

    @ekiernan
    ekiernan committed Aug 29, 2024
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  9. Updated pipeline_versions.txt with all pipeline version information

    @actions-user
    actions-user committed Aug 29, 2024
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  10. Update README.md

    @ekiernan
    ekiernan committed Aug 29, 2024
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  11. Merge branch 'lk-PD-2738-Snapatac2metrics' of https://github.com/broa… 

    …dinstitute/warp into lk-PD-2738-Snapatac2metrics
    @ekiernan
    ekiernan committed Aug 29, 2024
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  12. fixed docker version

    @ekiernan
    ekiernan committed Aug 29, 2024
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Commits on Sep 6, 2024

  1. updating memory on CreateFragment to 64 GB

    @ekiernan
    ekiernan committed Sep 6, 2024
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  2. Updated pipeline_versions.txt with all pipeline version information

    @actions-user
    actions-user committed Sep 6, 2024
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  3. Update atac.changelog.md

    @ekiernan
    ekiernan committed Sep 6, 2024
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  4. Merge branch 'lk-PD-2738-Snapatac2metrics' of https://github.com/broa… 

    …dinstitute/warp into lk-PD-2738-Snapatac2metrics
    @ekiernan
    ekiernan committed Sep 6, 2024
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  5. Merge pull request #1364 from broadinstitute/lk-PD-2738-Snapatac2metrics 

    adding 10x wrapper function
    @ekiernan
    ekiernan authored Sep 6, 2024
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