Welcome! This is CytoTools, a small package of utilities for analysis of cytometry data in Python. CytoTools started as a module in the first release of CytoPy.
CytoTools is now a standalone package that provides functions and classes for:
- Reading flow/mass cytometry data into memory
- Transforming flow/mass cytometry data using common methods such as Logicle and Arcsinh
- Dimension reduction
- Geometry tools useful for automated gating
- Down/up-sampling data including density-dependent sampling
- Landmark registration for peak alignment
For more information, check the full documentation here:
The CytoPy ecosystem is under development, see ### for details on release information.