add e2e and screenshot tests for comparison mutations table

end-to-end-test/remote/specs/core/groupComparison.screenshot.spec.js

@@ -428,6 +428,21 @@ describe('group comparison page screenshot tests', function() {
             );
             assertScreenShotMatch(res);
         });
+
+        it('group comparison page mutations tab two groups', function() {
+            goToUrlAndSetLocalStorage(
+                `${CBIOPORTAL_URL}/comparison/mutations?sessionId=5cf89323e4b0ab413787436c&selectedGene=AR`
+            );
+            $('.borderedChart svg').waitForDisplayed({ timeout: 20000 });
+            var res = browser.checkElement(
+                '[data-test="ComparisonPageMutationsTabPlot"]',
+                '',
+                {
+                    viewportChangePause: 4000,
+                }
+            ); // hide these things because the timing of data loading makes this test so flaky
+            assertScreenShotMatch(res);
+        });
     });
 
     describe('delete group from session', function() {

end-to-end-test/remote/specs/core/groupComparisonLollipop.spec.js

@@ -4,7 +4,10 @@ var goToUrlAndSetLocalStorage = require('../../../shared/specUtils')
 var setInputText = require('../../../shared/specUtils').setInputText;
 var setSettingsMenuOpen = require('../../../shared/specUtils')
     .setSettingsMenuOpen;
-const { getElementByTestHandle } = require('../../../shared/specUtils');
+const {
+    jsApiHover,
+    getElementByTestHandle,
+} = require('../../../shared/specUtils');
 
 const CBIOPORTAL_URL = process.env.CBIOPORTAL_URL.replace(/\/$/, '');
 
@@ -815,4 +818,177 @@ describe('group comparison mutations tab tests', function() {
             );
         });
     });
+
+    describe('displaying fisher exact test label', function() {
+        before(function() {
+            goToUrlAndSetLocalStorage(
+                `${CBIOPORTAL_URL}/comparison/mutations?sessionId=5cf89323e4b0ab413787436c&selectedGene=AR`
+            );
+            $('.lollipop-svgnode').waitForDisplayed({
+                timeout: 30000,
+            });
+        });
+
+        it('fisher test text and tooltip dynamically changes when filtering and selecting', function() {
+            // filter value
+            getElementByTestHandle('missense_putative_driver_only').click();
+
+            assert.equal(
+                getElementByTestHandle('fisherTestLabel').getText(),
+                'Fisher Exact Two-Sided Test p-value for filtered mutations - (A) Metastasis vs (B) Primary: 4.21e-8'
+            );
+
+            jsApiHover(getElementByTestHandle('infoIcon'));
+
+            getElementByTestHandle(
+                'patientMultipleMutationsMessage'
+            ).waitForExist();
+            assert.equal(
+                getElementByTestHandle(
+                    'patientMultipleMutationsMessage'
+                ).getText(),
+                '3 patients have more than one mutation in AR'
+            );
+
+            // select value
+            $('.lollipop-3').click();
+
+            assert.equal(
+                getElementByTestHandle('fisherTestLabel').getText(),
+                'Fisher Exact Two-Sided Test p-value for selected mutations - (A) Metastasis vs (B) Primary: 0.0305'
+            );
+
+            jsApiHover(getElementByTestHandle('infoIcon'));
+
+            getElementByTestHandle(
+                'patientMultipleMutationsMessage'
+            ).waitForExist();
+            assert.equal(
+                getElementByTestHandle(
+                    'patientMultipleMutationsMessage'
+                ).getText(),
+                '1 patient has more than one mutation in AR'
+            );
+
+            // default value
+            $('button=Remove filter').click();
+
+            assert.equal(
+                getElementByTestHandle('fisherTestLabel').getText(),
+                'Fisher Exact Two-Sided Test p-value for all mutations - (A) Metastasis vs (B) Primary: 7.200e-6'
+            );
+
+            jsApiHover(getElementByTestHandle('infoIcon'));
+
+            getElementByTestHandle(
+                'patientMultipleMutationsMessage'
+            ).waitForExist();
+            assert.equal(
+                getElementByTestHandle(
+                    'patientMultipleMutationsMessage'
+                ).getText(),
+                '4 patients have more than one mutation in AR'
+            );
+        });
+    });
+
+    describe('displaying table header and pagination status text', function() {
+        before(function() {
+            goToUrlAndSetLocalStorage(
+                `${CBIOPORTAL_URL}/comparison/mutations?sessionId=5cf89323e4b0ab413787436c&selectedGene=AR`
+            );
+            $('.lollipop-svgnode').waitForDisplayed({
+                timeout: 30000,
+            });
+        });
+
+        it('displays correct text and number of mutations and protein changes when filtering and selecting', function() {
+            // filter value
+            $('strong=Inframe').click();
+
+            assert.equal(
+                getElementByTestHandle('LazyMobXTable_CountHeader').getText(),
+                '14 Mutations (page 1 of 1)'
+            );
+
+            assert.equal(
+                $('.topPagination').getText(),
+                'Showing 1-14 of 14 Mutations'
+            );
+
+            // select value
+            $('.lollipop-1').click();
+
+            assert.equal(
+                getElementByTestHandle('LazyMobXTable_CountHeader').getText(),
+                '1 Mutation (page 1 of 1)'
+            );
+
+            assert.equal(
+                $('.topPagination').getText(),
+                'Showing 1-1 of 1 Mutation'
+            );
+
+            // default value
+            $('button=Remove filter').click();
+
+            assert.equal(
+                getElementByTestHandle('LazyMobXTable_CountHeader').getText(),
+                '16 Mutations (page 1 of 1)'
+            );
+
+            assert.equal(
+                $('.topPagination').getText(),
+                'Showing 1-16 of 16 Mutations'
+            );
+        });
+    });
+
+    describe('mutation table filtering options', function() {
+        beforeEach(function() {
+            goToUrlAndSetLocalStorage(
+                `${CBIOPORTAL_URL}/comparison/mutations?sessionId=5cf89323e4b0ab413787436c&selectedGene=AR`
+            );
+            $('.lollipop-svgnode').waitForDisplayed({
+                timeout: 30000,
+            });
+        });
+
+        it('filters table with search box', () => {
+            var searchInput = '[data-test=table-search-input]';
+            var numberOfRowsBefore = $$('tr').length;
+            $(searchInput).setValue('w7');
+            browser.waitUntil(() => $$('tr').length < numberOfRowsBefore);
+            assert($$('tr').length < numberOfRowsBefore);
+        });
+
+        it('filters table with enriched in dropdown', () => {
+            var numberOfRowsBefore = $$('tr').length;
+            getElementByTestHandle('enrichedInDropdown').click();
+            $('#react-select-6-option-0-0').click();
+            browser.waitUntil(() => $$('tr').length < numberOfRowsBefore);
+            assert($$('tr').length < numberOfRowsBefore);
+        });
+
+        it('filters table with significant only checkbox', () => {
+            var numberOfRowsBefore = $$('tr').length;
+            getElementByTestHandle('significantOnlyCheckbox').click();
+            browser.waitUntil(() => $$('tr').length < numberOfRowsBefore);
+            assert($$('tr').length < numberOfRowsBefore);
+        });
+
+        it('filters table with protein badge filtering', () => {
+            var numberOfRowsBefore = $$('tr').length;
+            $('strong=Missense').click();
+            browser.waitUntil(() => $$('tr').length < numberOfRowsBefore);
+            assert($$('tr').length < numberOfRowsBefore);
+        });
+
+        it('filters table with lollipop selection', () => {
+            var numberOfRowsBefore = $$('tr').length;
+            $('.lollipop-1').click();
+            browser.waitUntil(() => $$('tr').length < numberOfRowsBefore);
+            assert($$('tr').length < numberOfRowsBefore);
+        });
+    });
 });