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ClickHouse-Only cBioPortal Demo based on standard schema #10839

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ClickHouse-Only cBioPortal Demo based on standard schema #10839

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Commits on Apr 18, 2024

  1. Change mybatis mapper to use uppercase table and column names

    @pvannierop
    pvannierop committed Apr 18, 2024
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Commits on Jun 11, 2024

  1. fixes/changes to the point of home page rendering 

    - table names in mybatis mappers standardized to lower case only
- SQL format bugs fixed (such as 'ONSAMPLE.PATIENT_ID' -> 'ON sample.PATIENT_ID'
- SQL keywords captitalized where noticed
- comment out password setting to allow use of local redis
- some whitespace standardization included in AlterationCountsMapper.xml
    @sheridancbio
    sheridancbio committed Jun 11, 2024
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  2. whitespace standardization and clickhouse driver 

    - whitespace changes to AlterationCountsMapper.xml not separate from lowercasing of fields
    @sheridancbio
    sheridancbio committed Jun 11, 2024
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Commits on Jun 17, 2024

  1. lower case standardize field names 

    - also partial progress (to rendering of home page) fixing remaining GROUP BY issues
    @sheridancbio
    sheridancbio committed Jun 17, 2024
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Commits on Jun 18, 2024

  1. progress to rendering of study view page 

    - format SQL IN list clauses with minimal whitespace
- attempt at debugging AlterationCountMapper (incomplete)
- fix some missed case conversions (to all lower case fields and tables)
    @sheridancbio
    sheridancbio committed Jun 18, 2024
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Commits on Aug 15, 2024

  1. beginning of effort to get unit tests working

    @sheridancbio
    sheridancbio committed Aug 15, 2024
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Commits on Aug 20, 2024

  1. Dockerfile fixes for docker v2 updates

    @sheridancbio
    sheridancbio committed Aug 20, 2024
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Commits on Aug 22, 2024

  1. restore password in CustomRedisCachingProvider 

    put placeholder in migration.sql and make db version consistent
    @sheridancbio
    sheridancbio committed Aug 22, 2024
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Commits on Sep 3, 2024

  1. correct missed uppcase fieldname in DiscreteCopyNumberMapper.xml

    @sheridancbio
    sheridancbio committed Sep 3, 2024
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  2. drop undefined sub expressions from sample list sub query

    @sheridancbio
    sheridancbio committed Sep 3, 2024
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