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Removed sample due to no data (#1849)
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sbabyanusha committed Jun 29, 2023
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4 changes: 2 additions & 2 deletions public/prad_tcga_pub/case_lists/cases_all.txt
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cancer_study_identifier: prad_tcga_pub
stable_id: prad_tcga_pub_all
case_list_name: All samples
case_list_description: All samples (334 samples)
case_list_description: All samples (333 samples)
case_list_category: all_cases_in_study
case_list_ids: TCGA-EJ-A65E-01 TCGA-ZG-A8QX-01 TCGA-KK-A6E6-01 TCGA-G9-6342-01 TCGA-EJ-7125-01 TCGA-HC-7230-01 TCGA-H9-7775-01 TCGA-CH-5741-01 TCGA-J4-8200-01 TCGA-EJ-5509-01 TCGA-J9-A8CM-01 TCGA-KK-A8IA-01 TCGA-EJ-5532-01 TCGA-HI-7168-01 TCGA-CH-5754-01 TCGA-EJ-7783-01 TCGA-KK-A8IB-01 TCGA-EJ-7797-01 TCGA-YL-A9WI-01 TCGA-EJ-7314-01 TCGA-KC-A4BL-01 TCGA-XA-A8JR-01 TCGA-HC-7736-01 TCGA-CH-5751-01 TCGA-2A-A8VO-01 TCGA-KK-A7B3-01 TCGA-G9-6378-01 TCGA-HC-7212-01 TCGA-EJ-8468-01 TCGA-VN-A88P-01 TCGA-EJ-5507-01 TCGA-CH-5744-01 TCGA-YL-A8S9-01 TCGA-CH-5761-01 TCGA-VN-A88O-01 TCGA-EJ-5502-01 TCGA-G9-6366-01 TCGA-HC-7079-01 TCGA-KC-A4BN-01 TCGA-KK-A6E1-01 TCGA-HC-7211-01 TCGA-KK-A8I6-01 TCGA-EJ-7786-01 TCGA-EJ-7785-01 TCGA-J4-A83K-01 TCGA-HI-7170-01 TCGA-YL-A8SR-01 TCGA-EJ-7327-01 TCGA-YL-A8HK-01 TCGA-EJ-5501-01 TCGA-EJ-8470-01 TCGA-J4-A6G1-01 TCGA-EJ-A65G-01 TCGA-J9-A8CL-01 TCGA-EJ-A7NF-01 TCGA-HC-A76W-01 TCGA-HC-7231-01 TCGA-EJ-5516-01 TCGA-HC-8216-01 TCGA-CH-5794-01 TCGA-KK-A7B4-01 TCGA-HC-8264-01 TCGA-EJ-A8FN-01 TCGA-ZG-A8QY-01 TCGA-YL-A8SB-01 TCGA-HC-7821-01 TCGA-KC-A7F3-01 TCGA-HC-7742-01 TCGA-G9-6351-01 TCGA-HC-7818-01 TCGA-EJ-8474-01 TCGA-FC-7961-01 TCGA-HC-7075-01 TCGA-J9-A8CP-01 TCGA-EJ-5504-01 TCGA-VP-A87J-01 TCGA-KK-A8IK-01 TCGA-KC-A7F6-01 TCGA-CH-5763-01 TCGA-KK-A6E2-01 TCGA-HC-A8D1-01 TCGA-2A-A8VL-01 TCGA-CH-5766-01 TCGA-EJ-7321-01 TCGA-VP-A879-01 TCGA-KK-A59X-01 TCGA-KK-A8I4-01 TCGA-HC-7737-01 TCGA-V1-A8WS-01 TCGA-HC-8213-01 TCGA-HC-7233-01 TCGA-G9-7523-01 TCGA-EJ-5494-01 TCGA-V1-A8WV-01 TCGA-CH-5765-01 TCGA-2A-A8VT-01 TCGA-HC-7213-01 TCGA-G9-7519-01 TCGA-EJ-5514-01 TCGA-G9-6348-01 TCGA-YL-A8HM-01 TCGA-TK-A8OK-01 TCGA-G9-6377-01 TCGA-G9-6361-01 TCGA-EJ-5511-01 TCGA-EJ-5526-01 TCGA-XJ-A9DK-01 TCGA-EJ-7789-01 TCGA-HC-8257-01 TCGA-EJ-A7NG-01 TCGA-EJ-7794-01 TCGA-EJ-5542-01 TCGA-YL-A9WJ-01 TCGA-EJ-5512-01 TCGA-FC-A4JI-01 TCGA-EJ-5521-01 TCGA-YL-A8SK-01 TCGA-CH-5788-01 TCGA-HC-7077-01 TCGA-CH-5769-01 TCGA-KC-A4BR-01 TCGA-HC-7209-01 TCGA-2A-A8W3-01 TCGA-EJ-5519-01 TCGA-J4-A67T-01 TCGA-HC-7748-01 TCGA-G9-6365-01 TCGA-G9-6364-01 TCGA-G9-6367-01 TCGA-G9-7510-01 TCGA-YL-A8SL-01 TCGA-G9-6336-01 TCGA-EJ-5517-01 TCGA-V1-A8MG-01 TCGA-KC-A7FE-01 TCGA-KK-A7AU-01 TCGA-V1-A8MJ-01 TCGA-M7-A720-01 TCGA-VP-A87C-01 TCGA-HC-7080-01 TCGA-HC-A8D0-01 TCGA-EJ-7331-01 TCGA-EJ-5497-01 TCGA-G9-6494-01 TCGA-M7-A71Y-01 TCGA-EJ-7793-01 TCGA-SU-A7E7-01 TCGA-HC-8266-01 TCGA-HC-8265-01 TCGA-CH-5737-01 TCGA-YL-A8HL-01 TCGA-KK-A7AV-01 TCGA-EJ-7218-01 TCGA-YL-A8SC-01 TCGA-VN-A88I-01 TCGA-HI-7169-01 TCGA-CH-5753-01 TCGA-V1-A8X3-01 TCGA-G9-6371-01 TCGA-EJ-5498-01 TCGA-VN-A88Q-01 TCGA-EJ-5531-01 TCGA-YL-A8SH-01 TCGA-KK-A8I8-01 TCGA-CH-5750-01 TCGA-HC-8258-01 TCGA-EJ-A8FU-01 TCGA-EJ-5503-01 TCGA-EJ-7782-01 TCGA-YL-A8SF-01 TCGA-EJ-8469-01 TCGA-EJ-7123-01 TCGA-CH-5792-01 TCGA-XJ-A83H-01 TCGA-EJ-7315-01 TCGA-J4-A6M7-01 TCGA-VP-A872-01 TCGA-V1-A8ML-01 TCGA-HC-7744-01 TCGA-CH-5791-01 TCGA-EJ-A46I-01 TCGA-J4-8198-01 TCGA-HC-A76X-01 TCGA-YL-A8SO-01 TCGA-HC-A8CY-01 TCGA-KK-A6E0-01 TCGA-M7-A721-01 TCGA-EJ-A7NK-01 TCGA-HC-8260-01 TCGA-EJ-5522-01 TCGA-HC-7747-01 TCGA-KK-A8I5-01 TCGA-EJ-A8FS-01 TCGA-HC-7740-01 TCGA-HC-A4ZV-01 TCGA-EJ-8472-01 TCGA-EJ-5506-01 TCGA-EJ-5508-01 TCGA-VP-A87D-01 TCGA-EJ-A7NH-01 TCGA-KK-A8II-01 TCGA-CH-5740-01 TCGA-YL-A9WH-01 TCGA-HC-7232-01 TCGA-FC-A8O0-01 TCGA-FC-7708-01 TCGA-J9-A52B-01 TCGA-CH-5767-01 TCGA-KK-A8IJ-01 TCGA-V1-A8WW-01 TCGA-HC-7081-01 TCGA-CH-5743-01 TCGA-J4-A83N-01 TCGA-CH-5752-01 TCGA-VP-A87H-01 TCGA-G9-7521-01 TCGA-YL-A8HO-01 TCGA-G9-6499-01 TCGA-J4-A83M-01 TCGA-EJ-5499-01 TCGA-J4-A6G3-01 TCGA-VP-A878-01 TCGA-EJ-7781-01 TCGA-CH-5738-01 TCGA-G9-6385-01 TCGA-CH-5748-01 TCGA-VN-A88N-01 TCGA-YL-A8SQ-01 TCGA-HC-7078-01 TCGA-G9-7522-01 TCGA-FC-A5OB-01 TCGA-QU-A6IP-01 TCGA-EJ-7330-01 TCGA-EJ-5524-01 TCGA-KK-A6DY-01 TCGA-HC-7210-01 TCGA-V1-A8MU-01 TCGA-EJ-5510-01 TCGA-VN-A88R-01 TCGA-EJ-7791-01 TCGA-CH-5746-01 TCGA-M7-A725-01 TCGA-CH-5762-01 TCGA-KK-A7AP-01 TCGA-XJ-A9DI-01 TCGA-XJ-A83G-01 TCGA-J9-A8CK-01 TCGA-ZG-A8QZ-01 TCGA-HI-7171-01 TCGA-VP-A876-01 TCGA-KK-A8IC-01 TCGA-G9-6356-01 TCGA-YL-A8SP-01 TCGA-KK-A8IL-01 TCGA-HC-7820-01 TCGA-KK-A8IG-01 TCGA-KC-A4BV-01 TCGA-CH-5739-01 TCGA-HC-7750-01 TCGA-EJ-7788-01 TCGA-ZG-A8QW-01 TCGA-J9-A8CN-01 TCGA-EJ-5518-01 TCGA-WW-A8ZI-01 TCGA-G9-6333-01 TCGA-VP-A875-01 TCGA-EJ-5515-01 TCGA-KK-A8IH-01 TCGA-EJ-5495-01 TCGA-VP-A87K-01 TCGA-KK-A59Y-01 TCGA-V1-A8WN-01 TCGA-KK-A7B1-01 TCGA-HC-A632-01 TCGA-HC-A631-01 TCGA-EJ-A7NM-01 TCGA-YL-A8SA-01 TCGA-HC-8262-01 TCGA-2A-A8VV-01 TCGA-VP-A87E-01 TCGA-KC-A7FD-01 TCGA-VP-A87B-01 TCGA-CH-5764-01 TCGA-CH-5789-01 TCGA-EJ-5525-01 TCGA-KK-A59Z-01 TCGA-KK-A8IF-01 TCGA-EJ-7784-01 TCGA-EJ-7792-01 TCGA-YJ-A8SW-01 TCGA-HC-8256-01 TCGA-J4-A83I-01 TCGA-EJ-A65J-01 TCGA-EJ-7115-01 TCGA-EJ-5527-01 TCGA-XQ-A8TA-01 TCGA-EJ-7318-01 TCGA-EJ-7328-01 TCGA-EJ-A46D-01 TCGA-KC-A7FA-01 TCGA-VN-A88K-01 TCGA-CH-5772-01 TCGA-G9-6370-01 TCGA-CH-5771-01 TCGA-YL-A8SJ-01 TCGA-YL-A8HJ-01 TCGA-G9-6384-01 TCGA-EJ-A6RA-01 TCGA-EJ-5530-01 TCGA-KK-A8ID-01 TCGA-2A-A8W1-01 TCGA-G9-6353-01 TCGA-G9-6363-01 TCGA-HC-A48F-01 TCGA-HC-7749-01 TCGA-CH-5768-01 TCGA-KK-A8I9-01 TCGA-KK-A6E5-01 TCGA-EJ-A46G-01 TCGA-EJ-7317-01 TCGA-YL-A8S8-01 TCGA-VN-A88L-01 TCGA-V1-A8WL-01 TCGA-Y6-A8TL-01 TCGA-EJ-A6RC-01 TCGA-CH-5790-01 TCGA-EJ-A65F-01 TCGA-EJ-5505-01 TCGA-HC-8261-01 TCGA-XQ-A8TB-01 TCGA-V1-A8MF-01 TCGA-G9-6329-01 TCGA-EJ-A7NJ-01 TCGA-EJ-5496-01
case_list_ids: TCGA-EJ-A65E-01 TCGA-ZG-A8QX-01 TCGA-KK-A6E6-01 TCGA-G9-6342-01 TCGA-EJ-7125-01 TCGA-HC-7230-01 TCGA-H9-7775-01 TCGA-CH-5741-01 TCGA-J4-8200-01 TCGA-EJ-5509-01 TCGA-J9-A8CM-01 TCGA-KK-A8IA-01 TCGA-EJ-5532-01 TCGA-HI-7168-01 TCGA-CH-5754-01 TCGA-EJ-7783-01 TCGA-KK-A8IB-01 TCGA-EJ-7797-01 TCGA-YL-A9WI-01 TCGA-EJ-7314-01 TCGA-KC-A4BL-01 TCGA-XA-A8JR-01 TCGA-HC-7736-01 TCGA-CH-5751-01 TCGA-2A-A8VO-01 TCGA-KK-A7B3-01 TCGA-G9-6378-01 TCGA-HC-7212-01 TCGA-EJ-8468-01 TCGA-VN-A88P-01 TCGA-EJ-5507-01 TCGA-CH-5744-01 TCGA-YL-A8S9-01 TCGA-CH-5761-01 TCGA-VN-A88O-01 TCGA-EJ-5502-01 TCGA-G9-6366-01 TCGA-HC-7079-01 TCGA-KC-A4BN-01 TCGA-KK-A6E1-01 TCGA-HC-7211-01 TCGA-KK-A8I6-01 TCGA-EJ-7786-01 TCGA-EJ-7785-01 TCGA-J4-A83K-01 TCGA-HI-7170-01 TCGA-YL-A8SR-01 TCGA-EJ-7327-01 TCGA-YL-A8HK-01 TCGA-EJ-5501-01 TCGA-EJ-8470-01 TCGA-J4-A6G1-01 TCGA-EJ-A65G-01 TCGA-J9-A8CL-01 TCGA-EJ-A7NF-01 TCGA-HC-A76W-01 TCGA-HC-7231-01 TCGA-EJ-5516-01 TCGA-HC-8216-01 TCGA-CH-5794-01 TCGA-KK-A7B4-01 TCGA-HC-8264-01 TCGA-EJ-A8FN-01 TCGA-ZG-A8QY-01 TCGA-YL-A8SB-01 TCGA-HC-7821-01 TCGA-KC-A7F3-01 TCGA-HC-7742-01 TCGA-G9-6351-01 TCGA-HC-7818-01 TCGA-EJ-8474-01 TCGA-FC-7961-01 TCGA-HC-7075-01 TCGA-J9-A8CP-01 TCGA-EJ-5504-01 TCGA-VP-A87J-01 TCGA-KK-A8IK-01 TCGA-KC-A7F6-01 TCGA-CH-5763-01 TCGA-KK-A6E2-01 TCGA-HC-A8D1-01 TCGA-2A-A8VL-01 TCGA-CH-5766-01 TCGA-EJ-7321-01 TCGA-VP-A879-01 TCGA-KK-A59X-01 TCGA-KK-A8I4-01 TCGA-HC-7737-01 TCGA-V1-A8WS-01 TCGA-HC-8213-01 TCGA-HC-7233-01 TCGA-G9-7523-01 TCGA-EJ-5494-01 TCGA-V1-A8WV-01 TCGA-CH-5765-01 TCGA-2A-A8VT-01 TCGA-HC-7213-01 TCGA-G9-7519-01 TCGA-EJ-5514-01 TCGA-G9-6348-01 TCGA-YL-A8HM-01 TCGA-TK-A8OK-01 TCGA-G9-6377-01 TCGA-G9-6361-01 TCGA-EJ-5511-01 TCGA-EJ-5526-01 TCGA-XJ-A9DK-01 TCGA-EJ-7789-01 TCGA-HC-8257-01 TCGA-EJ-A7NG-01 TCGA-EJ-7794-01 TCGA-EJ-5542-01 TCGA-YL-A9WJ-01 TCGA-EJ-5512-01 TCGA-FC-A4JI-01 TCGA-EJ-5521-01 TCGA-YL-A8SK-01 TCGA-CH-5788-01 TCGA-HC-7077-01 TCGA-CH-5769-01 TCGA-KC-A4BR-01 TCGA-HC-7209-01 TCGA-2A-A8W3-01 TCGA-EJ-5519-01 TCGA-J4-A67T-01 TCGA-HC-7748-01 TCGA-G9-6365-01 TCGA-G9-6364-01 TCGA-G9-6367-01 TCGA-G9-7510-01 TCGA-YL-A8SL-01 TCGA-G9-6336-01 TCGA-EJ-5517-01 TCGA-V1-A8MG-01 TCGA-KC-A7FE-01 TCGA-KK-A7AU-01 TCGA-V1-A8MJ-01 TCGA-M7-A720-01 TCGA-VP-A87C-01 TCGA-HC-7080-01 TCGA-HC-A8D0-01 TCGA-EJ-7331-01 TCGA-EJ-5497-01 TCGA-G9-6494-01 TCGA-M7-A71Y-01 TCGA-EJ-7793-01 TCGA-SU-A7E7-01 TCGA-HC-8266-01 TCGA-HC-8265-01 TCGA-CH-5737-01 TCGA-YL-A8HL-01 TCGA-KK-A7AV-01 TCGA-EJ-7218-01 TCGA-YL-A8SC-01 TCGA-VN-A88I-01 TCGA-CH-5753-01 TCGA-V1-A8X3-01 TCGA-G9-6371-01 TCGA-EJ-5498-01 TCGA-VN-A88Q-01 TCGA-EJ-5531-01 TCGA-YL-A8SH-01 TCGA-KK-A8I8-01 TCGA-CH-5750-01 TCGA-HC-8258-01 TCGA-EJ-A8FU-01 TCGA-EJ-5503-01 TCGA-EJ-7782-01 TCGA-YL-A8SF-01 TCGA-EJ-8469-01 TCGA-EJ-7123-01 TCGA-CH-5792-01 TCGA-XJ-A83H-01 TCGA-EJ-7315-01 TCGA-J4-A6M7-01 TCGA-VP-A872-01 TCGA-V1-A8ML-01 TCGA-HC-7744-01 TCGA-CH-5791-01 TCGA-EJ-A46I-01 TCGA-J4-8198-01 TCGA-HC-A76X-01 TCGA-YL-A8SO-01 TCGA-HC-A8CY-01 TCGA-KK-A6E0-01 TCGA-M7-A721-01 TCGA-EJ-A7NK-01 TCGA-HC-8260-01 TCGA-EJ-5522-01 TCGA-HC-7747-01 TCGA-KK-A8I5-01 TCGA-EJ-A8FS-01 TCGA-HC-7740-01 TCGA-HC-A4ZV-01 TCGA-EJ-8472-01 TCGA-EJ-5506-01 TCGA-EJ-5508-01 TCGA-VP-A87D-01 TCGA-EJ-A7NH-01 TCGA-KK-A8II-01 TCGA-CH-5740-01 TCGA-YL-A9WH-01 TCGA-HC-7232-01 TCGA-FC-A8O0-01 TCGA-FC-7708-01 TCGA-J9-A52B-01 TCGA-CH-5767-01 TCGA-KK-A8IJ-01 TCGA-V1-A8WW-01 TCGA-HC-7081-01 TCGA-CH-5743-01 TCGA-J4-A83N-01 TCGA-CH-5752-01 TCGA-VP-A87H-01 TCGA-G9-7521-01 TCGA-YL-A8HO-01 TCGA-G9-6499-01 TCGA-J4-A83M-01 TCGA-EJ-5499-01 TCGA-J4-A6G3-01 TCGA-VP-A878-01 TCGA-EJ-7781-01 TCGA-CH-5738-01 TCGA-G9-6385-01 TCGA-CH-5748-01 TCGA-VN-A88N-01 TCGA-YL-A8SQ-01 TCGA-HC-7078-01 TCGA-G9-7522-01 TCGA-FC-A5OB-01 TCGA-QU-A6IP-01 TCGA-EJ-7330-01 TCGA-EJ-5524-01 TCGA-KK-A6DY-01 TCGA-HC-7210-01 TCGA-V1-A8MU-01 TCGA-EJ-5510-01 TCGA-VN-A88R-01 TCGA-EJ-7791-01 TCGA-CH-5746-01 TCGA-M7-A725-01 TCGA-CH-5762-01 TCGA-KK-A7AP-01 TCGA-XJ-A9DI-01 TCGA-XJ-A83G-01 TCGA-J9-A8CK-01 TCGA-ZG-A8QZ-01 TCGA-HI-7171-01 TCGA-VP-A876-01 TCGA-KK-A8IC-01 TCGA-G9-6356-01 TCGA-YL-A8SP-01 TCGA-KK-A8IL-01 TCGA-HC-7820-01 TCGA-KK-A8IG-01 TCGA-KC-A4BV-01 TCGA-CH-5739-01 TCGA-HC-7750-01 TCGA-EJ-7788-01 TCGA-ZG-A8QW-01 TCGA-J9-A8CN-01 TCGA-EJ-5518-01 TCGA-WW-A8ZI-01 TCGA-G9-6333-01 TCGA-VP-A875-01 TCGA-EJ-5515-01 TCGA-KK-A8IH-01 TCGA-EJ-5495-01 TCGA-VP-A87K-01 TCGA-KK-A59Y-01 TCGA-V1-A8WN-01 TCGA-KK-A7B1-01 TCGA-HC-A632-01 TCGA-HC-A631-01 TCGA-EJ-A7NM-01 TCGA-YL-A8SA-01 TCGA-HC-8262-01 TCGA-2A-A8VV-01 TCGA-VP-A87E-01 TCGA-KC-A7FD-01 TCGA-VP-A87B-01 TCGA-CH-5764-01 TCGA-CH-5789-01 TCGA-EJ-5525-01 TCGA-KK-A59Z-01 TCGA-KK-A8IF-01 TCGA-EJ-7784-01 TCGA-EJ-7792-01 TCGA-YJ-A8SW-01 TCGA-HC-8256-01 TCGA-J4-A83I-01 TCGA-EJ-A65J-01 TCGA-EJ-7115-01 TCGA-EJ-5527-01 TCGA-XQ-A8TA-01 TCGA-EJ-7318-01 TCGA-EJ-7328-01 TCGA-EJ-A46D-01 TCGA-KC-A7FA-01 TCGA-VN-A88K-01 TCGA-CH-5772-01 TCGA-G9-6370-01 TCGA-CH-5771-01 TCGA-YL-A8SJ-01 TCGA-YL-A8HJ-01 TCGA-G9-6384-01 TCGA-EJ-A6RA-01 TCGA-EJ-5530-01 TCGA-KK-A8ID-01 TCGA-2A-A8W1-01 TCGA-G9-6353-01 TCGA-G9-6363-01 TCGA-HC-A48F-01 TCGA-HC-7749-01 TCGA-CH-5768-01 TCGA-KK-A8I9-01 TCGA-KK-A6E5-01 TCGA-EJ-A46G-01 TCGA-EJ-7317-01 TCGA-YL-A8S8-01 TCGA-VN-A88L-01 TCGA-V1-A8WL-01 TCGA-Y6-A8TL-01 TCGA-EJ-A6RC-01 TCGA-CH-5790-01 TCGA-EJ-A65F-01 TCGA-EJ-5505-01 TCGA-HC-8261-01 TCGA-XQ-A8TB-01 TCGA-V1-A8MF-01 TCGA-G9-6329-01 TCGA-EJ-A7NJ-01 TCGA-EJ-5496-01
4 changes: 2 additions & 2 deletions public/prad_tcga_pub/data_clinical_sample.txt
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4 changes: 2 additions & 2 deletions public/prad_tcga_pub/prad_tcga_pub_nocnv.hg19.seg
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