importGenePanel.pl failing to import gene panels: MDSIWG152, RMG, agilent

[edoyango]

Hi,

I've been trying to setup a cBioPortal instance using the deploy with docker instructions which all works fine.

commit versions:
cbioportal-docker-compose: b69cb428c1b (master at time of writing).
datahub: 6009f12 (master at time of writing).

Once I start importing gene panels, MDSIWG152, RMG, and agilent panels fail due to missing genes:

MDSIWG152:

Warnings / Errors:
-------------------
0.  Could not find gene in the database: MIR-516A-1/3P; 1x
1.  Could not find gene in the database: MIR-516B-2/3P; 1x
2.  Could not find gene in the database: MIR1267; 1x
3.  Could not find gene in the database: MIR142; 1x
4.  Could not find gene in the database: MIR632; 1x
5.  Could not find gene in the database: MIR891A; 1x
6.  Gene panel MDSIWG152 cannot be imported because one or more genes in the panel are not found in the database, or are duplicated.; 1x

RMG:

Warnings / Errors:
-------------------
0.  Could not find gene in the database: MIR142; 1x
1.  Gene panel RMG cannot be imported because one or more genes in the panel are not found in the database, or are duplicated.; 1x

agilent:

Warnings / Errors:
-------------------
0.  Could not find gene in the database: MIR1288; 1x
1.  Gene panel Agilent cannot be imported because one or more genes in the panel are not found in the database, or are duplicated.; 1x

From what I can gather, these errors might have something to do with the seed database? I can confirm from the init.sh script in cbioportal-docker-compose that v2.12.14 is being used to seed the DB.

Are there setup steps that I'm missing?