Merge pull request #28 from josephmje/gh-pages

FIX: Fix BIDS derivatives
carpentries-incubator · Sep 2, 2021 · 48d6579 · 48d6579
2 parents 297fea4 + 374cd3e
commit 48d6579
Showing 1 changed file with 5 additions and 22 deletions.
diff --git a/code/05-bids-derivatives.ipynb b/code/05-bids-derivatives.ipynb
@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "1316c203",
+   "id": "115292ab",
    "metadata": {},
    "source": [
     "## BIDS Apps\n",
@@ -23,24 +23,12 @@
     "- <b>Singularity</b>\n",
     "  - for running containers on high performance compute clusters\n",
     "  \n",
-    "<img src=\"../fig/bids_app.png\" alt=\"Drawing\" align=\"middle\" width=\"500px\"/>"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "id": "026bb764",
-   "metadata": {},
-   "source": [
+    "<img src=\"../fig/bids_app.png\" alt=\"Drawing\" align=\"middle\" width=\"500px\"/>\n",
+    "\n",
     "Building a singularity container is as easy as:\n",
     "    \n",
-    "    `singularity build mriqc-0.16.1.simg docker://poldracklab/mriqc:0.16.1`"
-   ]
-  },
-  {
-   "cell_type": "markdown",
-   "id": "65420f23",
-   "metadata": {},
-   "source": [
+    "    `singularity build mriqc-0.16.1.simg docker://poldracklab/mriqc:0.16.1`\n",
+    "    \n",
     "To run the container:\n",
     "\n",
     "```\n",
@@ -50,11 +38,6 @@
     "  /data /data/derivatives participant\n",
     "```"
    ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "e2234bf1",
   }
  ],
  "metadata": {