From c8e46593273a3979c04a2cae807e6149da7201e4 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Thu, 29 Feb 2024 00:06:46 +0000
Subject: [PATCH] site deploy
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Auto-generated via {sandpaper}
Source  : da5e1d2692cc62e949cafbd9b7d0c6a13eb4c77e
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2024-02-29 00:06:33 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 389764ca21d386a5e53d79f6c4e612126be2440c
Branch  : main
Author  : Jon Haitz Legarreta Gorroño <jon.haitz.legarreta@gmail.com>
Time    : 2024-02-29 00:05:34 +0000
Message : Merge pull request #47 from jhlegarreta/FixNIfTIAnatomyFigCaption

ENH: Fix figure caption in `Anatomy of a NIfTI` episode
---
 404.html                               |  6 +++---
 CODE_OF_CONDUCT.html                   |  4 ++--
 LICENSE.html                           |  4 ++--
 aio.html                               | 27 +++++++++++++-------------
 anatomy-of-nifti.html                  | 25 ++++++++++++------------
 before-we-start.html                   |  4 ++--
 bids-derivatives.html                  |  4 ++--
 data-organization-bids.html            |  4 ++--
 discuss.html                           |  4 ++--
 images.html                            | 10 ++++++----
 index.html                             |  6 +++---
 instructor-notes.html                  |  6 +++---
 instructor/404.html                    |  6 +++---
 instructor/CODE_OF_CONDUCT.html        |  4 ++--
 instructor/LICENSE.html                |  4 ++--
 instructor/aio.html                    | 27 +++++++++++++-------------
 instructor/anatomy-of-nifti.html       | 25 ++++++++++++------------
 instructor/before-we-start.html        |  4 ++--
 instructor/bids-derivatives.html       |  4 ++--
 instructor/data-organization-bids.html |  4 ++--
 instructor/discuss.html                |  4 ++--
 instructor/images.html                 | 10 ++++++----
 instructor/index.html                  |  6 +++---
 instructor/instructor-notes.html       |  6 +++---
 instructor/key-points.html             |  6 +++---
 instructor/open-mri-datasets.html      |  4 ++--
 instructor/profiles.html               |  6 +++---
 instructor/reference.html              |  4 ++--
 instructor/scanner-to-computer.html    |  6 +++---
 key-points.html                        |  6 +++---
 md5sum.txt                             |  2 +-
 open-mri-datasets.html                 |  4 ++--
 pkgdown.yml                            |  2 +-
 profiles.html                          |  6 +++---
 reference.html                         |  4 ++--
 scanner-to-computer.html               |  6 +++---
 36 files changed, 132 insertions(+), 132 deletions(-)

diff --git a/404.html b/404.html
index ce83a07..f5a4041 100644
--- a/404.html
+++ b/404.html
@@ -315,9 +315,9 @@ <h1>Page not found</h1>
   "creativeWorkStatus": "active",
   "url": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/404.html",
   "identifier": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/404.html",
-  "dateCreated": "2024-02-28",
-  "dateModified": "2024-02-28",
-  "datePublished": "2024-02-28"
+  "dateCreated": "2024-02-29",
+  "dateModified": "2024-02-29",
+  "datePublished": "2024-02-29"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 8283fc4..aec9e2a 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -334,9 +334,9 @@ <h1>Contributor Code of Conduct</h1>
   "creativeWorkStatus": "active",
   "url": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/CODE_OF_CONDUCT.html",
   "identifier": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/CODE_OF_CONDUCT.html",
-  "dateCreated": "2024-02-28",
+  "dateCreated": "2024-02-29",
   "dateModified": "2024-02-18",
-  "datePublished": "2024-02-28"
+  "datePublished": "2024-02-29"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index 7b64902..fccbd60 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -385,9 +385,9 @@ <h1>Licenses</h1>
   "creativeWorkStatus": "active",
   "url": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/LICENSE.html",
   "identifier": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/LICENSE.html",
-  "dateCreated": "2024-02-28",
+  "dateCreated": "2024-02-29",
   "dateModified": "2024-02-18",
-  "datePublished": "2024-02-28"
+  "datePublished": "2024-02-29"
 }
 
   </script><script>
diff --git a/aio.html b/aio.html
index 3959a63..e525f5f 100644
--- a/aio.html
+++ b/aio.html
@@ -621,7 +621,7 @@ <h3 class="callout-title">Converting DICOM to NIfTI<a class="anchor" aria-label=
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb3">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -651,7 +651,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
 </div>
 </section></section><section id="aio-anatomy-of-nifti"><p>Content from <a href="anatomy-of-nifti.html">Anatomy of a NIfTI</a></p>
 <hr>
-<p>Last updated on 2024-02-28 |
+<p>Last updated on 2024-02-29 |
         
         <a href="https://github.com/carpentries-incubator/SDC-BIDS-IntroMRI/edit/main/episodes/anatomy-of-nifti.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 <div class="text-end">
@@ -872,7 +872,7 @@ <h3 class="callout-title">Extract values from the NIfTI header<a class="anchor"
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb8">
 <h3 class="code-label">PYTHON<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1026,7 +1026,7 @@ <h3 class="callout-title">Check out attributes of the array<a class="anchor" ari
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb14">
 <h3 class="code-label">PYTHON<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1064,7 +1064,7 @@ <h3 class="callout-title">Check out attributes of the array<em>(continued)</em><
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb16">
 <h3 class="code-label">PYTHON<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1142,10 +1142,9 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
 </h2>
 <hr class="half-width">
 <p>Slicing does exactly what it seems to imply. Giving our 3D volume, we
-pull out a 2D slice of our data. Here’s an example of slicing from left
-to right (sagittal slicing):</p>
-<figure><img src="fig/T1w.gif" class="figure mx-auto d-block"></figure><p>This gif is a series of 2D images or <strong>slices</strong> moving
-from left to right.</p>
+pull out a 2D <strong>slice</strong> of our data.</p>
+<p><img src="fig/T1w.gif" class="figure"> From left to right: sagittal, coronal and
+axial slices.</p>
 <p>Let’s pull the 10th slice in the x axis.</p>
 <div class="codewrapper sourceCode" id="cb24">
 <h3 class="code-label">PYTHON<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1173,7 +1172,7 @@ <h3 class="callout-title">Slicing MRI data<a class="anchor" aria-label="anchor"
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4">Show me the solution</h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb25">
 <h3 class="code-label">PYTHON<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1201,7 +1200,7 @@ <h3 class="callout-title">Slicing MRI data<em>(continued)</em><a class="anchor"
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution5" aria-expanded="false" aria-controls="collapseSolution5">
   <h4 class="accordion-header" id="headingSolution5">Show me the solution</h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb26">
 <h3 class="code-label">PYTHON<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -2258,9 +2257,9 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "creativeWorkStatus": "active",
   "url": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/aio.html",
   "identifier": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/aio.html",
-  "dateCreated": "2024-02-28",
-  "dateModified": "2024-02-28",
-  "datePublished": "2024-02-28"
+  "dateCreated": "2024-02-29",
+  "dateModified": "2024-02-29",
+  "datePublished": "2024-02-29"
 }
 
   </script><script>
diff --git a/anatomy-of-nifti.html b/anatomy-of-nifti.html
index 0d87a6a..598cfa5 100644
--- a/anatomy-of-nifti.html
+++ b/anatomy-of-nifti.html
@@ -269,7 +269,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
       </div>
       <hr></nav><main id="main-content" class="main-content"><div class="container lesson-content">
         <h1>Anatomy of a NIfTI</h1>
-        <p>Last updated on 2024-02-28 |
+        <p>Last updated on 2024-02-29 |
         
         <a href="https://github.com/carpentries-incubator/SDC-BIDS-IntroMRI/edit/main/episodes/anatomy-of-nifti.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
         
@@ -488,7 +488,7 @@ <h3 class="callout-title">Extract values from the NIfTI header<a class="anchor"
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb8">
 <h3 class="code-label">PYTHON<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -641,7 +641,7 @@ <h3 class="callout-title">Check out attributes of the array<a class="anchor" ari
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb14">
 <h3 class="code-label">PYTHON<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -679,7 +679,7 @@ <h3 class="callout-title">Check out attributes of the array<em>(continued)</em><
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb16">
 <h3 class="code-label">PYTHON<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -756,10 +756,9 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
 </section><section id="working-with-image-data"><h2 class="section-heading">Working with image data<a class="anchor" aria-label="anchor" href="#working-with-image-data"></a>
 </h2>
 <hr class="half-width"><p>Slicing does exactly what it seems to imply. Giving our 3D volume, we
-pull out a 2D slice of our data. Here’s an example of slicing from left
-to right (sagittal slicing):</p>
-<figure><img src="fig/T1w.gif" class="figure mx-auto d-block"></figure><p>This gif is a series of 2D images or <strong>slices</strong> moving
-from left to right.</p>
+pull out a 2D <strong>slice</strong> of our data.</p>
+<p><img src="fig/T1w.gif" class="figure"> From left to right: sagittal, coronal and
+axial slices.</p>
 <p>Let’s pull the 10th slice in the x axis.</p>
 <div class="codewrapper sourceCode" id="cb24">
 <h3 class="code-label">PYTHON<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -787,7 +786,7 @@ <h3 class="callout-title">Slicing MRI data<a class="anchor" aria-label="anchor"
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4">Show me the solution</h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb25">
 <h3 class="code-label">PYTHON<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -815,7 +814,7 @@ <h3 class="callout-title">Slicing MRI data<em>(continued)</em><a class="anchor"
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution5" aria-expanded="false" aria-controls="collapseSolution5">
   <h4 class="accordion-header" id="headingSolution5">Show me the solution</h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb26">
 <h3 class="code-label">PYTHON<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -995,9 +994,9 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "creativeWorkStatus": "active",
   "url": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/anatomy-of-nifti.html",
   "identifier": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/anatomy-of-nifti.html",
-  "dateCreated": "2024-02-28",
-  "dateModified": "2024-02-28",
-  "datePublished": "2024-02-28"
+  "dateCreated": "2024-02-29",
+  "dateModified": "2024-02-29",
+  "datePublished": "2024-02-29"
 }
 
   </script><script>
diff --git a/before-we-start.html b/before-we-start.html
index 64bca43..d456bf9 100644
--- a/before-we-start.html
+++ b/before-we-start.html
@@ -476,9 +476,9 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "creativeWorkStatus": "active",
   "url": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/before-we-start.html",
   "identifier": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/before-we-start.html",
-  "dateCreated": "2024-02-28",
+  "dateCreated": "2024-02-29",
   "dateModified": "2024-02-18",
-  "datePublished": "2024-02-28"
+  "datePublished": "2024-02-29"
 }
 
   </script><script>
diff --git a/bids-derivatives.html b/bids-derivatives.html
index 281b931..1990e90 100644
--- a/bids-derivatives.html
+++ b/bids-derivatives.html
@@ -403,9 +403,9 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "creativeWorkStatus": "active",
   "url": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/bids-derivatives.html",
   "identifier": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/bids-derivatives.html",
-  "dateCreated": "2024-02-28",
+  "dateCreated": "2024-02-29",
   "dateModified": "2024-02-28",
-  "datePublished": "2024-02-28"
+  "datePublished": "2024-02-29"
 }
 
   </script><script>
diff --git a/data-organization-bids.html b/data-organization-bids.html
index fcaefd2..8aa4b56 100644
--- a/data-organization-bids.html
+++ b/data-organization-bids.html
@@ -406,9 +406,9 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "creativeWorkStatus": "active",
   "url": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/data-organization-bids.html",
   "identifier": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/data-organization-bids.html",
-  "dateCreated": "2024-02-28",
+  "dateCreated": "2024-02-29",
   "dateModified": "2024-02-28",
-  "datePublished": "2024-02-28"
+  "datePublished": "2024-02-29"
 }
 
   </script><script>
diff --git a/discuss.html b/discuss.html
index 5f89304..8e14732 100644
--- a/discuss.html
+++ b/discuss.html
@@ -327,9 +327,9 @@ <h1>Discussion</h1>
   "creativeWorkStatus": "active",
   "url": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/discuss.html",
   "identifier": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/discuss.html",
-  "dateCreated": "2024-02-28",
+  "dateCreated": "2024-02-29",
   "dateModified": "2024-02-18",
-  "datePublished": "2024-02-28"
+  "datePublished": "2024-02-29"
 }
 
   </script><script>
diff --git a/images.html b/images.html
index 9e4b50a..6e90080 100644
--- a/images.html
+++ b/images.html
@@ -334,7 +334,9 @@ <h3 id="anatomy-of-nifti-figure-2">Figure 2</h3>
 What about the how big each dimension is (shape)?</p>
 <hr>
 <h3 id="anatomy-of-nifti-figure-3">Figure 3</h3>
-<figure><img src="fig/T1w.gif" class="figure mx-auto d-block"></figure><hr>
+<p><img src="fig/T1w.gif" class="figure"> From left to right: sagittal, coronal and
+axial slices.</p>
+<hr>
 <h3 id="anatomy-of-nifti-figure-4">Figure 4</h3>
 <figure><img src="fig/coordinate_systems.png" class="figure mx-auto d-block"></figure><hr></section><section id="data-organization-bids"><h2 class="section-heading"><a href="data-organization-bids.html">Data organization with BIDS</a></h2>
 <hr class="half-width"></section><section id="open-mri-datasets"><h2 class="section-heading"><a href="open-mri-datasets.html">Exploring open MRI datasets</a></h2>
@@ -388,9 +390,9 @@ <h3 id="bids-derivatives-figure-1">Figure 1</h3>
   "creativeWorkStatus": "active",
   "url": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/images.html",
   "identifier": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/images.html",
-  "dateCreated": "2024-02-28",
-  "dateModified": "2024-02-28",
-  "datePublished": "2024-02-28"
+  "dateCreated": "2024-02-29",
+  "dateModified": "2024-02-29",
+  "datePublished": "2024-02-29"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index bd72ce2..51f9199 100644
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index ed5bb47..8917cc4 100644
--- a/instructor-notes.html
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-  "dateCreated": "2024-02-28",
-  "dateModified": "2024-02-28",
-  "datePublished": "2024-02-28"
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index 66f83a9..d5bcb3b 100644
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-  "dateCreated": "2024-02-28",
-  "dateModified": "2024-02-28",
-  "datePublished": "2024-02-28"
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 }
 
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index 812fc0b..105226a 100644
--- a/instructor/CODE_OF_CONDUCT.html
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-  "dateCreated": "2024-02-28",
+  "dateCreated": "2024-02-29",
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diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index 5e67d8f..15039b9 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
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   "identifier": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/instructor/LICENSE.html",
-  "dateCreated": "2024-02-28",
+  "dateCreated": "2024-02-29",
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diff --git a/instructor/aio.html b/instructor/aio.html
index 2945167..719ff42 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
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-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
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@@ -655,7 +655,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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 </section></section><section id="aio-anatomy-of-nifti"><p>Content from <a href="anatomy-of-nifti.html">Anatomy of a NIfTI</a></p>
 <hr>
-<p>Last updated on 2024-02-28 |
+<p>Last updated on 2024-02-29 |
         
         <a href="https://github.com/carpentries-incubator/SDC-BIDS-IntroMRI/edit/main/episodes/anatomy-of-nifti.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 <p>Estimated time: <i aria-hidden="true" data-feather="clock"></i> 25 minutes</p>
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@@ -1147,10 +1147,9 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
 </h2>
 <hr class="half-width">
 <p>Slicing does exactly what it seems to imply. Giving our 3D volume, we
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+pull out a 2D <strong>slice</strong> of our data.</p>
+<p><img src="../fig/T1w.gif" class="figure"> From left to right: sagittal, coronal and
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 <p>Let’s pull the 10th slice in the x axis.</p>
 <div class="codewrapper sourceCode" id="cb24">
 <h3 class="code-label">PYTHON<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
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diff --git a/instructor/anatomy-of-nifti.html b/instructor/anatomy-of-nifti.html
index c23ed80..f3fe8d3 100644
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         <h1>Anatomy of a NIfTI</h1>
-        <p>Last updated on 2024-02-28 |
+        <p>Last updated on 2024-02-29 |
         
         <a href="https://github.com/carpentries-incubator/SDC-BIDS-IntroMRI/edit/main/episodes/anatomy-of-nifti.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
         
@@ -490,7 +490,7 @@ <h3 class="callout-title">Extract values from the NIfTI header<a class="anchor"
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@@ -758,10 +758,9 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
 </section><section id="working-with-image-data"><h2 class="section-heading">Working with image data<a class="anchor" aria-label="anchor" href="#working-with-image-data"></a>
 </h2>
 <hr class="half-width"><p>Slicing does exactly what it seems to imply. Giving our 3D volume, we
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-to right (sagittal slicing):</p>
-<figure><img src="../fig/T1w.gif" class="figure mx-auto d-block"></figure><p>This gif is a series of 2D images or <strong>slices</strong> moving
-from left to right.</p>
+pull out a 2D <strong>slice</strong> of our data.</p>
+<p><img src="../fig/T1w.gif" class="figure"> From left to right: sagittal, coronal and
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 <p>Let’s pull the 10th slice in the x axis.</p>
 <div class="codewrapper sourceCode" id="cb24">
 <h3 class="code-label">PYTHON<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -789,7 +788,7 @@ <h3 class="callout-title">Slicing MRI data<a class="anchor" aria-label="anchor"
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diff --git a/instructor/bids-derivatives.html b/instructor/bids-derivatives.html
index 413c72c..4c43151 100644
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-  "dateCreated": "2024-02-28",
+  "dateCreated": "2024-02-29",
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index 0ecde7f..70b8399 100644
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   "identifier": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/instructor/data-organization-bids.html",
-  "dateCreated": "2024-02-28",
+  "dateCreated": "2024-02-29",
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index f10f00e..4fedc9f 100644
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   "identifier": "https://carpentries-incubator.github.io/SDC-BIDS-IntroMRI/instructor/discuss.html",
-  "dateCreated": "2024-02-28",
+  "dateCreated": "2024-02-29",
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diff --git a/instructor/images.html b/instructor/images.html
index 10d67e8..1c8d122 100644
--- a/instructor/images.html
+++ b/instructor/images.html
@@ -336,7 +336,9 @@ <h3 id="anatomy-of-nifti-figure-2">Figure 2</h3>
 What about the how big each dimension is (shape)?</p>
 <hr>
 <h3 id="anatomy-of-nifti-figure-3">Figure 3</h3>
-<figure><img src="../fig/T1w.gif" class="figure mx-auto d-block"></figure><hr>
+<p><img src="../fig/T1w.gif" class="figure"> From left to right: sagittal, coronal and
+axial slices.</p>
+<hr>
 <h3 id="anatomy-of-nifti-figure-4">Figure 4</h3>
 <figure><img src="../fig/coordinate_systems.png" class="figure mx-auto d-block"></figure><hr></section><section id="data-organization-bids"><h2 class="section-heading"><a href="data-organization-bids.html">Data organization with BIDS</a></h2>
 <hr class="half-width"></section><section id="open-mri-datasets"><h2 class="section-heading"><a href="open-mri-datasets.html">Exploring open MRI datasets</a></h2>
@@ -390,9 +392,9 @@ <h3 id="bids-derivatives-figure-1">Figure 1</h3>
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-  "datePublished": "2024-02-28"
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index 765294d..d363279 100644
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index 18368e3..d79eb11 100644
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index cad0dc2..01eb1f2 100644
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index 744d296..b877627 100644
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index b61be22..36b4431 100644
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index 444cda9..7f58574 100644
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