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diff --git a/03-installing-bioconductor.html b/03-installing-bioconductor.html
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index bac16597..ecbde854 100644
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diff --git a/06-biological-sequences.html b/06-biological-sequences.html
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 <pre><code><span><span class="fu">width</span><span class="op">(</span><span class="va">actb_aa</span><span class="op">)</span></span>
 <span><span class="co"># or</span></span>
@@ -950,7 +950,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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diff --git a/LICENSE.html b/LICENSE.html
index 61838f43..af24328c 100644
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 <pre><code><span><span class="fu">width</span><span class="op">(</span><span class="va">actb_aa</span><span class="op">)</span></span>
 <span><span class="co"># or</span></span>
@@ -3597,7 +3597,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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index bd4a3e42..06486e88 100644
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 <p>The method <code>countPattern()</code> reports 3 hits, because the
 option <code>fixed = FALSE</code> allows the pattern <code>GM</code> to
@@ -716,7 +716,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <pre><code>&gt; setdiff(AA_PROTEINOGENIC, AA_STANDARD)
 [1] "U" "O"</code></pre>
@@ -859,7 +859,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4">Show me the solution</h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <pre><code><span><span class="fu">width</span><span class="op">(</span><span class="va">actb_aa</span><span class="op">)</span></span>
 <span><span class="co"># or</span></span>
@@ -952,7 +952,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/06-biological-sequences.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/07-genomic-ranges.html b/instructor/07-genomic-ranges.html
index cd51e64f..e4a96e2a 100644
--- a/instructor/07-genomic-ranges.html
+++ b/instructor/07-genomic-ranges.html
@@ -536,7 +536,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb5">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1232,7 +1232,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb51">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1427,7 +1427,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/07-genomic-ranges.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/404.html b/instructor/404.html
index 42d977c3..10b93db4 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -327,8 +327,8 @@ <h1>Page not found</h1>
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/404.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/404.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index 507670f4..f3be0c3c 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -347,7 +347,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/CODE_OF_CONDUCT.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index 895a360b..d10c1b10 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -399,7 +399,7 @@ <h1>Licenses</h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/LICENSE.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/aio.html b/instructor/aio.html
index 68a9f4a8..b661d384 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -2823,7 +2823,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Yes, this is a valid DNA sequence using ambiguity codes defined in
 the <a href="https://en.wikipedia.org/wiki/Nucleic_acid_notation#IUPAC_notation" class="external-link">IUPAC</a>
@@ -3015,7 +3015,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <p>The method <code>countPattern()</code> reports 3 hits, because the
 option <code>fixed = FALSE</code> allows the pattern <code>GM</code> to
@@ -3156,7 +3156,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <pre><code>&gt; setdiff(AA_PROTEINOGENIC, AA_STANDARD)
 [1] "U" "O"</code></pre>
@@ -3300,7 +3300,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4">Show me the solution</h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <pre><code><span><span class="fu">width</span><span class="op">(</span><span class="va">actb_aa</span><span class="op">)</span></span>
 <span><span class="co"># or</span></span>
@@ -3606,7 +3606,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb5">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4313,7 +4313,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb51">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4500,8 +4500,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/aio.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/aio.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/discuss.html b/instructor/discuss.html
index 425a9ca8..f770aa05 100644
--- a/instructor/discuss.html
+++ b/instructor/discuss.html
@@ -497,7 +497,7 @@ <h3 id="transition-between-devel-and-release---the-release-process">Transition b
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/discuss.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/images.html b/instructor/images.html
index 0f737d23..4d9095c6 100644
--- a/instructor/images.html
+++ b/instructor/images.html
@@ -411,8 +411,8 @@ <h3 id="07-genomic-ranges-figure-3">Figure 3</h3>
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/images.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/images.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index a18c1ef8..8632c3de 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -455,8 +455,8 @@ <h3 class="callout-title">Prerequisites<a class="anchor" aria-label="anchor" hre
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/index.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/index.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index 6338158d..b13194e3 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -391,8 +391,8 @@ <h1>Instructor Notes</h1>
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/instructor-notes.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/instructor-notes.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/key-points.html b/instructor/key-points.html
index eb0ec06d..fe11487e 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -455,8 +455,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/key-points.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/key-points.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/profiles.html b/instructor/profiles.html
index 435ac598..e1f948da 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -296,8 +296,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/profiles.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/reference.html b/instructor/reference.html
index 2e72d0ea..f2a797c6 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -426,7 +426,7 @@ <h1></h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/reference.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/key-points.html b/key-points.html
index cc5390ba..538bde00 100644
--- a/key-points.html
+++ b/key-points.html
@@ -453,8 +453,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/bioc-project/key-points.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/key-points.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/pkgdown.yml b/pkgdown.yml
index 262f0d0b..e47ed345 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,5 +2,5 @@ pandoc: 2.19.2
 pkgdown: 2.0.7
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-01-02T01:06Z
+last_built: 2024-01-09T01:09Z
 
diff --git a/profiles.html b/profiles.html
index f979ebe0..5287b260 100644
--- a/profiles.html
+++ b/profiles.html
@@ -296,8 +296,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/bioc-project/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/profiles.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index 4b785842..f97ee818 100644
--- a/reference.html
+++ b/reference.html
@@ -424,7 +424,7 @@ <h1></h1>
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   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>