From 9bd5d94da91012c3ea0f7a0fd72fb74f1ba44cb9 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 9 Jan 2024 01:09:45 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : c8b349c6f2833e996656303179fde798fcb94039
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2023-11-28 01:08:44 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 522aa3d1f1f01c9c59ecdb127cf784517507467d
Branch  : main
Author  : The Carpentries Apprentice (beta) <64428345+carpentries-bot@users.noreply.github.com>
Time    : 2023-11-07 14:42:01 +0000
Message : [actions] update 23 packages (#76)

Co-authored-by: zkamvar <zkamvar@users.noreply.github.com>
---
 01-setup.html                                   |  2 +-
 02-introduction-to-bioconductor.html            |  2 +-
 03-installing-bioconductor.html                 |  2 +-
 04-getting-help.html                            |  2 +-
 05-s4.html                                      |  2 +-
 06-biological-sequences.html                    | 10 +++++-----
 07-genomic-ranges.html                          |  6 +++---
 404.html                                        |  4 ++--
 CODE_OF_CONDUCT.html                            |  2 +-
 LICENSE.html                                    |  2 +-
 aio.html                                        | 16 ++++++++--------
 discuss.html                                    |  2 +-
 images.html                                     |  4 ++--
 index.html                                      |  4 ++--
 instructor-notes.html                           |  4 ++--
 instructor/01-setup.html                        |  2 +-
 instructor/02-introduction-to-bioconductor.html |  2 +-
 instructor/03-installing-bioconductor.html      |  2 +-
 instructor/04-getting-help.html                 |  2 +-
 instructor/05-s4.html                           |  2 +-
 instructor/06-biological-sequences.html         | 10 +++++-----
 instructor/07-genomic-ranges.html               |  6 +++---
 instructor/404.html                             |  4 ++--
 instructor/CODE_OF_CONDUCT.html                 |  2 +-
 instructor/LICENSE.html                         |  2 +-
 instructor/aio.html                             | 16 ++++++++--------
 instructor/discuss.html                         |  2 +-
 instructor/images.html                          |  4 ++--
 instructor/index.html                           |  4 ++--
 instructor/instructor-notes.html                |  4 ++--
 instructor/key-points.html                      |  4 ++--
 instructor/profiles.html                        |  4 ++--
 instructor/reference.html                       |  2 +-
 key-points.html                                 |  4 ++--
 pkgdown.yml                                     |  2 +-
 profiles.html                                   |  4 ++--
 reference.html                                  |  2 +-
 37 files changed, 75 insertions(+), 75 deletions(-)

diff --git a/01-setup.html b/01-setup.html
index 4bd20cbc..d6f196a6 100644
--- a/01-setup.html
+++ b/01-setup.html
@@ -455,7 +455,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/01-setup.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/02-introduction-to-bioconductor.html b/02-introduction-to-bioconductor.html
index 6409e958..bf13c0b4 100644
--- a/02-introduction-to-bioconductor.html
+++ b/02-introduction-to-bioconductor.html
@@ -854,7 +854,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/02-introduction-to-bioconductor.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/03-installing-bioconductor.html b/03-installing-bioconductor.html
index a7a831bd..9de5a829 100644
--- a/03-installing-bioconductor.html
+++ b/03-installing-bioconductor.html
@@ -836,7 +836,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/03-installing-bioconductor.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/04-getting-help.html b/04-getting-help.html
index bac16597..ecbde854 100644
--- a/04-getting-help.html
+++ b/04-getting-help.html
@@ -700,7 +700,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/04-getting-help.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/05-s4.html b/05-s4.html
index 4232e095..ea937879 100644
--- a/05-s4.html
+++ b/05-s4.html
@@ -1140,7 +1140,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/05-s4.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/06-biological-sequences.html b/06-biological-sequences.html
index 430d129f..b43e9244 100644
--- a/06-biological-sequences.html
+++ b/06-biological-sequences.html
@@ -388,7 +388,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Yes, this is a valid DNA sequence using ambiguity codes defined in
 the <a href="https://en.wikipedia.org/wiki/Nucleic_acid_notation#IUPAC_notation" class="external-link">IUPAC</a>
@@ -577,7 +577,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <p>The method <code>countPattern()</code> reports 3 hits, because the
 option <code>fixed = FALSE</code> allows the pattern <code>GM</code> to
@@ -714,7 +714,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <pre><code>&gt; setdiff(AA_PROTEINOGENIC, AA_STANDARD)
 [1] "U" "O"</code></pre>
@@ -857,7 +857,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4">Show me the solution</h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <pre><code><span><span class="fu">width</span><span class="op">(</span><span class="va">actb_aa</span><span class="op">)</span></span>
 <span><span class="co"># or</span></span>
@@ -950,7 +950,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/06-biological-sequences.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/07-genomic-ranges.html b/07-genomic-ranges.html
index 89f075fe..0511f7b3 100644
--- a/07-genomic-ranges.html
+++ b/07-genomic-ranges.html
@@ -534,7 +534,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb5">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1230,7 +1230,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb51">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1425,7 +1425,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/07-genomic-ranges.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/404.html b/404.html
index 4936b2a7..6f242e3c 100644
--- a/404.html
+++ b/404.html
@@ -327,8 +327,8 @@ <h1>Page not found</h1>
   "url": "https://carpentries-incubator.github.io/bioc-project/404.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/404.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 452c8b82..bdc5f41d 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -345,7 +345,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-project/CODE_OF_CONDUCT.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index 61838f43..af24328c 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -397,7 +397,7 @@ <h1>Licenses</h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-project/LICENSE.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/aio.html b/aio.html
index 1d3483c0..d5c223bd 100644
--- a/aio.html
+++ b/aio.html
@@ -2815,7 +2815,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Yes, this is a valid DNA sequence using ambiguity codes defined in
 the <a href="https://en.wikipedia.org/wiki/Nucleic_acid_notation#IUPAC_notation" class="external-link">IUPAC</a>
@@ -3007,7 +3007,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <p>The method <code>countPattern()</code> reports 3 hits, because the
 option <code>fixed = FALSE</code> allows the pattern <code>GM</code> to
@@ -3148,7 +3148,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <pre><code>&gt; setdiff(AA_PROTEINOGENIC, AA_STANDARD)
 [1] "U" "O"</code></pre>
@@ -3292,7 +3292,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4">Show me the solution</h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <pre><code><span><span class="fu">width</span><span class="op">(</span><span class="va">actb_aa</span><span class="op">)</span></span>
 <span><span class="co"># or</span></span>
@@ -3597,7 +3597,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb5">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4304,7 +4304,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb51">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4491,8 +4491,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "url": "https://carpentries-incubator.github.io/bioc-project/aio.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/aio.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
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diff --git a/discuss.html b/discuss.html
index 0a19e02b..362d3918 100644
--- a/discuss.html
+++ b/discuss.html
@@ -495,7 +495,7 @@ <h3 id="transition-between-devel-and-release---the-release-process">Transition b
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   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/images.html b/images.html
index 6c0ab9c5..bc86781f 100644
--- a/images.html
+++ b/images.html
@@ -409,8 +409,8 @@ <h3 id="07-genomic-ranges-figure-3">Figure 3</h3>
   "url": "https://carpentries-incubator.github.io/bioc-project/images.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/images.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index d51f33a0..c48c7d53 100644
--- a/index.html
+++ b/index.html
@@ -359,8 +359,8 @@ <h3 class="callout-title">Prerequisites<a class="anchor" aria-label="anchor" hre
   "url": "https://carpentries-incubator.github.io/bioc-project/index.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/index.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index bd4a3e42..06486e88 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -382,8 +382,8 @@ <h1>Instructor Notes</h1>
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor-notes.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor-notes.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/01-setup.html b/instructor/01-setup.html
index 3a8fb6a1..51d382ba 100644
--- a/instructor/01-setup.html
+++ b/instructor/01-setup.html
@@ -457,7 +457,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/01-setup.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/02-introduction-to-bioconductor.html b/instructor/02-introduction-to-bioconductor.html
index b1d1a763..e38e238c 100644
--- a/instructor/02-introduction-to-bioconductor.html
+++ b/instructor/02-introduction-to-bioconductor.html
@@ -856,7 +856,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/02-introduction-to-bioconductor.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/03-installing-bioconductor.html b/instructor/03-installing-bioconductor.html
index 281bf9be..39da16d4 100644
--- a/instructor/03-installing-bioconductor.html
+++ b/instructor/03-installing-bioconductor.html
@@ -838,7 +838,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/03-installing-bioconductor.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/04-getting-help.html b/instructor/04-getting-help.html
index ae854446..46420982 100644
--- a/instructor/04-getting-help.html
+++ b/instructor/04-getting-help.html
@@ -702,7 +702,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
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diff --git a/instructor/05-s4.html b/instructor/05-s4.html
index e5c2b403..e9dee8cb 100644
--- a/instructor/05-s4.html
+++ b/instructor/05-s4.html
@@ -1142,7 +1142,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
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diff --git a/instructor/06-biological-sequences.html b/instructor/06-biological-sequences.html
index 6b3b0433..b0e2969d 100644
--- a/instructor/06-biological-sequences.html
+++ b/instructor/06-biological-sequences.html
@@ -390,7 +390,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Yes, this is a valid DNA sequence using ambiguity codes defined in
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@@ -579,7 +579,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <p>The method <code>countPattern()</code> reports 3 hits, because the
 option <code>fixed = FALSE</code> allows the pattern <code>GM</code> to
@@ -716,7 +716,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <pre><code>&gt; setdiff(AA_PROTEINOGENIC, AA_STANDARD)
 [1] "U" "O"</code></pre>
@@ -859,7 +859,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <pre><code><span><span class="fu">width</span><span class="op">(</span><span class="va">actb_aa</span><span class="op">)</span></span>
 <span><span class="co"># or</span></span>
@@ -952,7 +952,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
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index cd51e64f..e4a96e2a 100644
--- a/instructor/07-genomic-ranges.html
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-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
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   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
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@@ -1427,7 +1427,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
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diff --git a/instructor/404.html b/instructor/404.html
index 42d977c3..10b93db4 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -327,8 +327,8 @@ <h1>Page not found</h1>
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   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index 507670f4..f3be0c3c 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -347,7 +347,7 @@ <h1>Contributor Code of Conduct</h1>
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   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index 895a360b..d10c1b10 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -399,7 +399,7 @@ <h1>Licenses</h1>
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   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
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diff --git a/instructor/aio.html b/instructor/aio.html
index 68a9f4a8..b661d384 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
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 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Yes, this is a valid DNA sequence using ambiguity codes defined in
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@@ -3015,7 +3015,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <p>The method <code>countPattern()</code> reports 3 hits, because the
 option <code>fixed = FALSE</code> allows the pattern <code>GM</code> to
@@ -3156,7 +3156,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
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-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <pre><code>&gt; setdiff(AA_PROTEINOGENIC, AA_STANDARD)
 [1] "U" "O"</code></pre>
@@ -3300,7 +3300,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
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 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
 <div class="accordion-body">
 <pre><code><span><span class="fu">width</span><span class="op">(</span><span class="va">actb_aa</span><span class="op">)</span></span>
 <span><span class="co"># or</span></span>
@@ -3606,7 +3606,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
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 <div class="codewrapper sourceCode" id="cb5">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4313,7 +4313,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb51">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4500,8 +4500,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/discuss.html b/instructor/discuss.html
index 425a9ca8..f770aa05 100644
--- a/instructor/discuss.html
+++ b/instructor/discuss.html
@@ -497,7 +497,7 @@ <h3 id="transition-between-devel-and-release---the-release-process">Transition b
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/discuss.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/images.html b/instructor/images.html
index 0f737d23..4d9095c6 100644
--- a/instructor/images.html
+++ b/instructor/images.html
@@ -411,8 +411,8 @@ <h3 id="07-genomic-ranges-figure-3">Figure 3</h3>
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/images.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/images.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index a18c1ef8..8632c3de 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -455,8 +455,8 @@ <h3 class="callout-title">Prerequisites<a class="anchor" aria-label="anchor" hre
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/index.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/index.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index 6338158d..b13194e3 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -391,8 +391,8 @@ <h1>Instructor Notes</h1>
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/instructor-notes.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/instructor-notes.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
   </script><script>
diff --git a/instructor/key-points.html b/instructor/key-points.html
index eb0ec06d..fe11487e 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -455,8 +455,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
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   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/key-points.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
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diff --git a/instructor/profiles.html b/instructor/profiles.html
index 435ac598..e1f948da 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -296,8 +296,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/bioc-project/instructor/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/profiles.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
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diff --git a/instructor/reference.html b/instructor/reference.html
index 2e72d0ea..f2a797c6 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -426,7 +426,7 @@ <h1></h1>
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   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
 }
 
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diff --git a/key-points.html b/key-points.html
index cc5390ba..538bde00 100644
--- a/key-points.html
+++ b/key-points.html
@@ -453,8 +453,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/bioc-project/key-points.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/key-points.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
+  "datePublished": "2024-01-09"
 }
 
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diff --git a/pkgdown.yml b/pkgdown.yml
index 262f0d0b..e47ed345 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,5 +2,5 @@ pandoc: 2.19.2
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 pkgdown_sha: ~
 articles: {}
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+last_built: 2024-01-09T01:09Z
 
diff --git a/profiles.html b/profiles.html
index f979ebe0..5287b260 100644
--- a/profiles.html
+++ b/profiles.html
@@ -296,8 +296,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/bioc-project/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-project/profiles.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2024-01-02",
-  "datePublished": "2024-01-02"
+  "dateModified": "2024-01-09",
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diff --git a/reference.html b/reference.html
index 4b785842..f97ee818 100644
--- a/reference.html
+++ b/reference.html
@@ -424,7 +424,7 @@ <h1></h1>
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-  "datePublished": "2024-01-02"
+  "datePublished": "2024-01-09"
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