From e4c6cca941be61a0215123757b0a5105032645f4 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 26 Dec 2023 01:05:41 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : c8b349c6f2833e996656303179fde798fcb94039
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2023-11-28 01:08:44 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 522aa3d1f1f01c9c59ecdb127cf784517507467d
Branch  : main
Author  : The Carpentries Apprentice (beta) <64428345+carpentries-bot@users.noreply.github.com>
Time    : 2023-11-07 14:42:01 +0000
Message : [actions] update 23 packages (#76)

Co-authored-by: zkamvar <zkamvar@users.noreply.github.com>
---
 01-setup.html                                 | 19 +++++-----
 02-introduction-to-bioconductor.html          | 23 ++++++------
 03-installing-bioconductor.html               | 19 +++++-----
 04-getting-help.html                          | 19 +++++-----
 05-s4.html                                    | 23 ++++++------
 06-biological-sequences.html                  | 27 +++++++-------
 07-genomic-ranges.html                        | 23 ++++++------
 404.html                                      | 15 ++++----
 CODE_OF_CONDUCT.html                          | 19 +++++-----
 LICENSE.html                                  | 19 +++++-----
 aio.html                                      | 36 ++++++++++---------
 discuss.html                                  | 19 +++++-----
 images.html                                   | 16 +++++----
 index.html                                    |  7 ++--
 instructor-notes.html                         | 16 +++++----
 instructor/01-setup.html                      | 19 +++++-----
 .../02-introduction-to-bioconductor.html      | 23 ++++++------
 instructor/03-installing-bioconductor.html    | 19 +++++-----
 instructor/04-getting-help.html               | 19 +++++-----
 instructor/05-s4.html                         | 23 ++++++------
 instructor/06-biological-sequences.html       | 27 +++++++-------
 instructor/07-genomic-ranges.html             | 23 ++++++------
 instructor/404.html                           | 15 ++++----
 instructor/CODE_OF_CONDUCT.html               | 19 +++++-----
 instructor/LICENSE.html                       | 19 +++++-----
 instructor/aio.html                           | 36 ++++++++++---------
 instructor/discuss.html                       | 19 +++++-----
 instructor/images.html                        | 16 +++++----
 instructor/index.html                         |  7 ++--
 instructor/instructor-notes.html              | 16 +++++----
 instructor/key-points.html                    | 16 +++++----
 instructor/profiles.html                      | 21 ++++++-----
 instructor/reference.html                     | 19 +++++-----
 key-points.html                               | 16 +++++----
 pkgdown.yml                                   |  2 +-
 profiles.html                                 | 21 ++++++-----
 reference.html                                | 19 +++++-----
 37 files changed, 357 insertions(+), 357 deletions(-)

diff --git a/01-setup.html b/01-setup.html
index 4dac41cb..068ed071 100644
--- a/01-setup.html
+++ b/01-setup.html
@@ -135,16 +135,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlushcurrent">
   <div class="accordion-item">
@@ -434,7 +432,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -447,6 +445,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/01-setup.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
   "keywords": "software, data, lesson, The Carpentries",
@@ -456,7 +455,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/01-setup.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/02-introduction-to-bioconductor.html b/02-introduction-to-bioconductor.html
index 2699bc98..ee103a2e 100644
--- a/02-introduction-to-bioconductor.html
+++ b/02-introduction-to-bioconductor.html
@@ -135,16 +135,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -500,7 +498,7 @@ <h3 class="callout-title">Challenge: The Bioconductor website<a class="anchor" a
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>The following solution includes numbers that were valid at the time
 of writing (Bioconductor release 3.13); numbers will inevitably be
@@ -571,7 +569,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>
 <code>RNAseq</code>, <code>ChIPSeq</code>, <code>Epigenetics</code>,
@@ -833,7 +831,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -846,6 +844,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/02-introduction-to-bioconductor.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
   "keywords": "software, data, lesson, The Carpentries",
@@ -855,7 +854,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/02-introduction-to-bioconductor.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/03-installing-bioconductor.html b/03-installing-bioconductor.html
index c86405b5..5c9ee571 100644
--- a/03-installing-bioconductor.html
+++ b/03-installing-bioconductor.html
@@ -135,16 +135,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -815,7 +813,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -828,6 +826,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/03-installing-bioconductor.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
   "keywords": "software, data, lesson, The Carpentries",
@@ -837,7 +836,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/03-installing-bioconductor.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/04-getting-help.html b/04-getting-help.html
index 8e2ae59b..bb0ae6b7 100644
--- a/04-getting-help.html
+++ b/04-getting-help.html
@@ -135,16 +135,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -679,7 +677,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -692,6 +690,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/04-getting-help.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
   "keywords": "software, data, lesson, The Carpentries",
@@ -701,7 +700,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/04-getting-help.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/05-s4.html b/05-s4.html
index a4b9f120..ca905fd9 100644
--- a/05-s4.html
+++ b/05-s4.html
@@ -135,16 +135,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -729,7 +727,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <pre><code>&gt; DF2["name1", ]
 DataFrame with 1 row and 3 columns
@@ -784,7 +782,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <pre><code>&gt; DF3["a", ]
 DataFrame with 1 row and 3 columns
@@ -1119,7 +1117,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -1132,6 +1130,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/05-s4.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
   "keywords": "software, data, lesson, The Carpentries",
@@ -1141,7 +1140,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://carpentries-incubator.github.io/bioc-project/05-s4.html",
   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/06-biological-sequences.html b/06-biological-sequences.html
index 19919a07..32f7ffc4 100644
--- a/06-biological-sequences.html
+++ b/06-biological-sequences.html
@@ -135,16 +135,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
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@@ -390,7 +388,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Yes, this is a valid DNA sequence using ambiguity codes defined in
 the <a href="https://en.wikipedia.org/wiki/Nucleic_acid_notation#IUPAC_notation" class="external-link">IUPAC</a>
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-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
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 <p>The method <code>countPattern()</code> reports 3 hits, because the
 option <code>fixed = FALSE</code> allows the pattern <code>GM</code> to
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 <pre><code>&gt; setdiff(AA_PROTEINOGENIC, AA_STANDARD)
 [1] "U" "O"</code></pre>
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+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <pre><code><span><span class="fu">width</span><span class="op">(</span><span class="va">actb_aa</span><span class="op">)</span></span>
 <span><span class="co"># or</span></span>
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 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
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@@ -2337,7 +2338,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <pre><code>&gt; DF2["name1", ]
 DataFrame with 1 row and 3 columns
@@ -2392,7 +2393,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <pre><code>&gt; DF3["a", ]
 DataFrame with 1 row and 3 columns
@@ -2814,7 +2815,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Yes, this is a valid DNA sequence using ambiguity codes defined in
 the <a href="https://en.wikipedia.org/wiki/Nucleic_acid_notation#IUPAC_notation" class="external-link">IUPAC</a>
@@ -3006,7 +3007,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>The method <code>countPattern()</code> reports 3 hits, because the
 option <code>fixed = FALSE</code> allows the pattern <code>GM</code> to
@@ -3147,7 +3148,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <pre><code>&gt; setdiff(AA_PROTEINOGENIC, AA_STANDARD)
 [1] "U" "O"</code></pre>
@@ -3291,7 +3292,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4">Show me the solution</h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <pre><code><span><span class="fu">width</span><span class="op">(</span><span class="va">actb_aa</span><span class="op">)</span></span>
 <span><span class="co"># or</span></span>
@@ -3596,7 +3597,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb5">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4303,7 +4304,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb51">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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@@ -4481,6 +4482,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/aio.html",
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   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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   "dateCreated": "2020-09-14",
-  "dateModified": "2023-12-19",
-  "datePublished": "2023-12-19"
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diff --git a/discuss.html b/discuss.html
index 97e786ef..5241ebe2 100644
--- a/discuss.html
+++ b/discuss.html
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                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
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-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/discuss.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
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diff --git a/images.html b/images.html
index 1a9b62b9..a6f59abb 100644
--- a/images.html
+++ b/images.html
@@ -167,14 +167,15 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
+        <a href="index.html">Summary and Setup</a>
     </div>
-    <!--/div.accordion-header-->
+<!--/div.accordion-header-->
+        
   </div>
-  <!--/div.accordion-item-->
+<!--/div.accordion-item-->
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 <!--/div.accordion-flush-->
 
@@ -385,7 +386,7 @@ <h3 id="07-genomic-ranges-figure-3">Figure 3</h3>
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         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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@@ -399,6 +400,7 @@ <h3 id="07-genomic-ranges-figure-3">Figure 3</h3>
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   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/images.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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   "dateCreated": "2020-09-14",
-  "dateModified": "2023-12-19",
-  "datePublished": "2023-12-19"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
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diff --git a/index.html b/index.html
index 159c8629..e17370ae 100644
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+++ b/index.html
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         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -350,6 +350,7 @@ <h3 class="callout-title">Prerequisites<a class="anchor" aria-label="anchor" hre
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/index.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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   "dateCreated": "2020-09-14",
-  "dateModified": "2023-12-19",
-  "datePublished": "2023-12-19"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index 7728e9bd..5b416b25 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -167,14 +167,15 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
+        <a href="index.html">Summary and Setup</a>
     </div>
-    <!--/div.accordion-header-->
+<!--/div.accordion-header-->
+        
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-  <!--/div.accordion-item-->
+<!--/div.accordion-item-->
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 <!--/div.accordion-flush-->
 
@@ -358,7 +359,7 @@ <h1>Instructor Notes</h1>
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         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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@@ -372,6 +373,7 @@ <h1>Instructor Notes</h1>
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/instructor-notes.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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   "dateCreated": "2020-09-14",
-  "dateModified": "2023-12-19",
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index 33793df8..f81bcc6b 100644
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                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
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-      <a href="index.html">Summary and Schedule</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Schedule</a>
+    </div><!--/div.accordion-header-->
+        
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         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
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-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
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 <ol style="list-style-type: decimal"><li>
 <code>RNAseq</code>, <code>ChIPSeq</code>, <code>Epigenetics</code>,
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diff --git a/instructor/05-s4.html b/instructor/05-s4.html
index 2dada230..5b06d463 100644
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@@ -731,7 +729,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <pre><code>&gt; DF2["name1", ]
 DataFrame with 1 row and 3 columns
@@ -786,7 +784,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <pre><code>&gt; DF3["a", ]
 DataFrame with 1 row and 3 columns
@@ -1121,7 +1119,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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diff --git a/instructor/06-biological-sequences.html b/instructor/06-biological-sequences.html
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@@ -392,7 +390,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
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 <p>Yes, this is a valid DNA sequence using ambiguity codes defined in
 the <a href="https://en.wikipedia.org/wiki/Nucleic_acid_notation#IUPAC_notation" class="external-link">IUPAC</a>
@@ -581,7 +579,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>The method <code>countPattern()</code> reports 3 hits, because the
 option <code>fixed = FALSE</code> allows the pattern <code>GM</code> to
@@ -718,7 +716,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <pre><code>&gt; setdiff(AA_PROTEINOGENIC, AA_STANDARD)
 [1] "U" "O"</code></pre>
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 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <pre><code><span><span class="fu">width</span><span class="op">(</span><span class="va">actb_aa</span><span class="op">)</span></span>
 <span><span class="co"># or</span></span>
@@ -931,7 +929,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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@@ -944,6 +942,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/instructor/06-biological-sequences.html",
+  "inLanguage": "en",
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   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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@@ -953,7 +952,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
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diff --git a/instructor/07-genomic-ranges.html b/instructor/07-genomic-ranges.html
index 07612baf..52f0b3af 100644
--- a/instructor/07-genomic-ranges.html
+++ b/instructor/07-genomic-ranges.html
@@ -135,16 +135,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
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     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Schedule</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Schedule</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -538,7 +536,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb5">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1234,7 +1232,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
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 <div class="codewrapper sourceCode" id="cb51">
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@@ -1406,7 +1404,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -1419,6 +1417,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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   "@type": "TrainingMaterial",
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   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
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diff --git a/instructor/404.html b/instructor/404.html
index 9a70c850..edf6dce2 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -139,12 +139,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
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     <div class="accordion-header" id="flush-heading1">
-      <a href="https://carpentries-incubator.github.io/bioc-project/index.html" class="external-link">Summary and Setup</a>
+        <a href="https://carpentries-incubator.github.io/bioc-project/index.html" class="external-link">Summary and Setup</a>
     </div>
-    <!--/div.accordion-header-->
+<!--/div.accordion-header-->
+        
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+
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@@ -316,6 +318,7 @@ <h1>Page not found</h1>
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 }
 
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diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index 801a1684..16019c2e 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -135,16 +135,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
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-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
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-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Schedule</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -326,7 +324,7 @@ <h1>Contributor Code of Conduct</h1>
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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 	<div id="to-top">
@@ -339,6 +337,7 @@ <h1>Contributor Code of Conduct</h1>
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   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/instructor/CODE_OF_CONDUCT.html",
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   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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 }
 
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diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index cddc3815..8cd556a9 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -135,16 +135,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
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-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
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-      <a href="index.html">Summary and Schedule</a>
-    </div>
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+        <a href="index.html">Summary and Schedule</a>
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+  </div><!--/div.accordion-item-->
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@@ -378,7 +376,7 @@ <h1>Licenses</h1>
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 	<div id="to-top">
@@ -391,6 +389,7 @@ <h1>Licenses</h1>
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
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@@ -400,7 +399,7 @@ <h1>Licenses</h1>
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   "dateCreated": "2020-09-14",
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diff --git a/instructor/aio.html b/instructor/aio.html
index ea1f2407..bc4a5174 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -168,14 +168,15 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Schedule</a>
+        <a href="index.html">Summary and Schedule</a>
     </div>
-    <!--/div.accordion-header-->
+<!--/div.accordion-header-->
+        
   </div>
-  <!--/div.accordion-item-->
+<!--/div.accordion-item-->
 </div>
 <!--/div.accordion-flush-->
 
@@ -676,7 +677,7 @@ <h3 class="callout-title">Challenge: The Bioconductor website<a class="anchor" a
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>The following solution includes numbers that were valid at the time
 of writing (Bioconductor release 3.13); numbers will inevitably be
@@ -754,7 +755,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>
@@ -2344,7 +2345,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <pre><code>&gt; DF2["name1", ]
 DataFrame with 1 row and 3 columns
@@ -2399,7 +2400,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <pre><code>&gt; DF3["a", ]
 DataFrame with 1 row and 3 columns
@@ -2822,7 +2823,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Yes, this is a valid DNA sequence using ambiguity codes defined in
 the <a href="https://en.wikipedia.org/wiki/Nucleic_acid_notation#IUPAC_notation" class="external-link">IUPAC</a>
@@ -3014,7 +3015,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <p>The method <code>countPattern()</code> reports 3 hits, because the
 option <code>fixed = FALSE</code> allows the pattern <code>GM</code> to
@@ -3155,7 +3156,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <pre><code>&gt; setdiff(AA_PROTEINOGENIC, AA_STANDARD)
 [1] "U" "O"</code></pre>
@@ -3299,7 +3300,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4">Show me the solution</h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <pre><code><span><span class="fu">width</span><span class="op">(</span><span class="va">actb_aa</span><span class="op">)</span></span>
 <span><span class="co"># or</span></span>
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 <div class="codewrapper sourceCode" id="cb51">
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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@@ -4490,6 +4491,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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-  "dateModified": "2023-12-19",
-  "datePublished": "2023-12-19"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
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-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
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-      <a href="index.html">Summary and Schedule</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Schedule</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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   "@type": "TrainingMaterial",
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+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
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-      <a href="index.html">Summary and Schedule</a>
+        <a href="index.html">Summary and Schedule</a>
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-    <!--/div.accordion-header-->
+<!--/div.accordion-header-->
+        
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-  <!--/div.accordion-item-->
+<!--/div.accordion-item-->
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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@@ -401,6 +402,7 @@ <h3 id="07-genomic-ranges-figure-3">Figure 3</h3>
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-  "dateModified": "2023-12-19",
-  "datePublished": "2023-12-19"
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 }
 
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diff --git a/instructor/index.html b/instructor/index.html
index 546bf672..21f568b2 100644
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@@ -433,7 +433,7 @@ <h3 class="callout-title">Prerequisites<a class="anchor" aria-label="anchor" hre
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-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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@@ -446,6 +446,7 @@ <h3 class="callout-title">Prerequisites<a class="anchor" aria-label="anchor" hre
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   "@type": "TrainingMaterial",
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   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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-  "dateModified": "2023-12-19",
-  "datePublished": "2023-12-19"
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 }
 
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diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index c95912b8..5d8cf675 100644
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@@ -168,14 +168,15 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
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                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
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     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Schedule</a>
+        <a href="index.html">Summary and Schedule</a>
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-    <!--/div.accordion-header-->
+<!--/div.accordion-header-->
+        
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-  <!--/div.accordion-item-->
+<!--/div.accordion-item-->
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-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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@@ -381,6 +382,7 @@ <h1>Instructor Notes</h1>
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/instructor/instructor-notes.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/instructor-notes.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2023-12-19",
-  "datePublished": "2023-12-19"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
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diff --git a/instructor/key-points.html b/instructor/key-points.html
index 84b157f6..002ac450 100644
--- a/instructor/key-points.html
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@@ -168,14 +168,15 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Schedule</a>
+        <a href="index.html">Summary and Schedule</a>
     </div>
-    <!--/div.accordion-header-->
+<!--/div.accordion-header-->
+        
   </div>
-  <!--/div.accordion-item-->
+<!--/div.accordion-item-->
 </div>
 <!--/div.accordion-flush-->
 
@@ -431,7 +432,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
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         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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@@ -445,6 +446,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
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   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/instructor/key-points.html",
+  "inLanguage": "en",
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   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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   "identifier": "https://carpentries-incubator.github.io/bioc-project/instructor/key-points.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2023-12-19",
-  "datePublished": "2023-12-19"
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 }
 
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diff --git a/instructor/profiles.html b/instructor/profiles.html
index f9478775..7bc3e83e 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -135,16 +135,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
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     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Schedule</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Schedule</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
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@@ -276,7 +274,7 @@ <h1>Learner Profiles</h1>
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-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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 	<div id="to-top">
@@ -289,6 +287,7 @@ <h1>Learner Profiles</h1>
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/instructor/profiles.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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@@ -297,8 +296,8 @@ <h1>Learner Profiles</h1>
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-  "dateModified": "2023-12-19",
-  "datePublished": "2023-12-19"
+  "dateModified": "2023-12-26",
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 }
 
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diff --git a/instructor/reference.html b/instructor/reference.html
index 9951e68c..18e1bb34 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
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                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Schedule</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Schedule</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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@@ -418,6 +416,7 @@ <h1></h1>
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   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/instructor/reference.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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   "dateCreated": "2020-09-14",
   "dateModified": "2023-11-21",
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 }
 
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index dbd43abb..3ba31858 100644
--- a/key-points.html
+++ b/key-points.html
@@ -167,14 +167,15 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
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                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
+        <a href="index.html">Summary and Setup</a>
     </div>
-    <!--/div.accordion-header-->
+<!--/div.accordion-header-->
+        
   </div>
-  <!--/div.accordion-item-->
+<!--/div.accordion-item-->
 </div>
 <!--/div.accordion-flush-->
 
@@ -429,7 +430,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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@@ -443,6 +444,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/key-points.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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@@ -451,8 +453,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
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   "identifier": "https://carpentries-incubator.github.io/bioc-project/key-points.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2023-12-19",
-  "datePublished": "2023-12-19"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
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diff --git a/pkgdown.yml b/pkgdown.yml
index 492933ce..fc4666b8 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,5 +2,5 @@ pandoc: 2.19.2
 pkgdown: 2.0.7
 pkgdown_sha: ~
 articles: {}
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+last_built: 2023-12-26T01:05Z
 
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index 91af0175..de2125a5 100644
--- a/profiles.html
+++ b/profiles.html
@@ -135,16 +135,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
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                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -276,7 +274,7 @@ <h1>Learner Profiles</h1>
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         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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 	<div id="to-top">
@@ -289,6 +287,7 @@ <h1>Learner Profiles</h1>
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/profiles.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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   "identifier": "https://carpentries-incubator.github.io/bioc-project/profiles.html",
   "dateCreated": "2020-09-14",
-  "dateModified": "2023-12-19",
-  "datePublished": "2023-12-19"
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 }
 
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diff --git a/reference.html b/reference.html
index cee1ff32..98127d30 100644
--- a/reference.html
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@@ -135,16 +135,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
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                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
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     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
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@@ -403,7 +401,7 @@ <h1></h1>
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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 	<div id="to-top">
@@ -416,6 +414,7 @@ <h1></h1>
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://carpentries-incubator.github.io/bioc-project/reference.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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   "dateCreated": "2020-09-14",
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