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Add episode for SummarizedExperiment #89

Merged
merged 12 commits into from
Aug 1, 2024
Merged

Add episode for SummarizedExperiment #89

merged 12 commits into from
Aug 1, 2024

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kevinrue
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@kevinrue kevinrue commented Aug 1, 2024

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github-actions bot commented Aug 1, 2024

Thank you!

Thank you for your pull request 😃

🤖 This automated message can help you check the rendered files in your submission for clarity. If you have any questions, please feel free to open an issue in {sandpaper}.

If you have files that automatically render output (e.g. R Markdown), then you should check for the following:

  • 🎯 correct output
  • 🖼️ correct figures
  • ❓ new warnings
  • ‼️ new errors

Rendered Changes

🔍 Inspect the changes: https://github.com/carpentries-incubator/bioc-project/compare/md-outputs..md-outputs-PR-89

The following changes were observed in the rendered markdown documents:

 05-s4.md                           |   45 -
 08-annotations.md                  |    8 +
 09-summarizedexperiment.md (new)   |  472 ++++++++++
 config.yaml (new)                  |   87 ++
 download_data.R                    |   16 +-
 fig/summarizedexperiment.svg (new) |    1 +
 md5sum.txt                         |    7 +-
 renv.lock (new)                    | 1786 ++++++++++++++++++++++++++++++++++++
 8 files changed, 2372 insertions(+), 50 deletions(-)
What does this mean?

If you have source files that require output and figures to be generated (e.g. R Markdown), then it is important to make sure the generated figures and output are reproducible.

This output provides a way for you to inspect the output in a diff-friendly manner so that it's easy to see the changes that occur due to new software versions or randomisation.

⏱️ Updated at 2024-08-01 12:33:23 +0000

github-actions bot pushed a commit that referenced this pull request Aug 1, 2024
@kevinrue kevinrue merged commit 02e9dbc into main Aug 1, 2024
3 checks passed
@kevinrue kevinrue deleted the kra-se branch August 1, 2024 12:58
github-actions bot pushed a commit that referenced this pull request Aug 1, 2024
Auto-generated via {sandpaper}
Source  : 02e9dbc
Branch  : main
Author  : Kevin Rue-Albrecht <kevinrue67@gmail.com>
Time    : 2024-08-01 12:58:31 +0000
Message : Add episode for SummarizedExperiment (#89)

* add episode for SummarizedExperiment

* describe SE class

* add SE episode

* read count data

* parse row and column metadata

* create SE with metadata

* accessors

* metadata

* add/edit

* reprhase intro

* add key points

* download SE input files

---------

Co-authored-by: Kevin Rue <kevinrue@users.noreply.github.com>
github-actions bot pushed a commit that referenced this pull request Aug 1, 2024
Auto-generated via {sandpaper}
Source  : e5e2e78
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2024-08-01 13:00:50 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 02e9dbc
Branch  : main
Author  : Kevin Rue-Albrecht <kevinrue67@gmail.com>
Time    : 2024-08-01 12:58:31 +0000
Message : Add episode for SummarizedExperiment (#89)

* add episode for SummarizedExperiment

* describe SE class

* add SE episode

* read count data

* parse row and column metadata

* create SE with metadata

* accessors

* metadata

* add/edit

* reprhase intro

* add key points

* download SE input files

---------

Co-authored-by: Kevin Rue <kevinrue@users.noreply.github.com>
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