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30 Open 140 Closed
30 Open 140 Closed
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Issues list

Add data input check to ensure expression counts are integers
#280 opened Sep 21, 2023 by catavallejos
1
comparing single cell and single nuclei datasets
#279 opened Dec 29, 2022 by binyaminZ
3
Edit Summary so that merged tables can be provided
#272 opened Nov 26, 2022 by catavallejos
BASiCS_DenoisedCounts requires no further data normalisation?
#264 opened Sep 5, 2022 by binyaminZ
7
Intuition for noise parameter
#237 opened May 25, 2022 by binyaminZ
5
Theta doesn't converge
#235 opened Mar 25, 2022 by binyaminZ
10
Improve error documentation in BASiCS_PlotVG
#221 opened Dec 17, 2020 by catavallejos
EB prior for phi?
#215 opened Oct 30, 2020 by catavallejos
Cumulative plots for diagnostics?
#214 opened Oct 26, 2020 by catavallejos
2
Threads needs to be documented in BASiCS_MCCM
#207 opened Sep 30, 2020 by catavallejos
Read BatchInfo directly from colData ?
#206 opened Sep 29, 2020 by catavallejos
2
Exclusion based on ESS in BASiCS_TestDE
#201 opened Aug 20, 2020 by catavallejos
1
Move from cowplot to patchwork
#200 opened Aug 19, 2020 by catavallejos
1
In BASiCS_TestDE change defaults for Plot and PlotOffset to FALSE
#197 opened Aug 10, 2020 by catavallejos
Add option to exclude spike-ins from BASiCS_DenoisedCounts
#196 opened Aug 7, 2020 by catavallejos
Move repository to VallejosGroup/BASiCS ?
#195 opened Aug 6, 2020 by catavallejos
Deprecate BASiCS_VarThresholdSearchVG ?
#191 opened Aug 5, 2020 by catavallejos
Exclude genes with low ESS from BASiCS_DetectHVG/LVG?
#179 opened May 28, 2020 by catavallejos
2
Add EB to the documentation and vignette
#177 opened May 25, 2020 by catavallejos
Improve convergence diagnostics
#176 opened May 25, 2020 by catavallejos
1
Alternative to newBASiCS_Data?
#175 opened May 21, 2020 by catavallejos
7
Add option to exclude spike-in in denoised counts / rates
#167 opened Mar 10, 2020 by catavallejos
BASiCS_TestDE gets stuck when Offset = FALSE
#166 opened Mar 10, 2020 by catavallejos
1
Some tests for parameter estimation use non-zero tolerance
#160 opened Feb 16, 2020 by catavallejos
BASiCS_Draw fails in the absence of Batch
#150 opened Dec 20, 2019 by catavallejos
1
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