cx 1.18.8 CRAN (#47)

* CX updated to 18.1 * test updates * new tests added * test cleanup * updated to new factory paradigm * destroy fix added * test updates * tests ok'd by Isaac - working as designed * documentation for destroy option * ready for cran submission * bugfix for destruction of existing plots during recreation * commit notes * badges commented out for cran push (pandoc bug with img.shields.io) * reducing to patch version 0 * updated cran comments * v1.18.2 * ready for 1.18.3 submission * v1.18.3 accepted * updated version * mergeback * update to cx 18.5 * tests updated * catching errors and replacing assumption that undefined is equal to zero * cran prep * cran ready * v1.18.5 accepted * test updates * cx updates * v18.8 cx updates * updated R version and tested Added additional tests * submission * badges
cb4ds · Mar 15, 2018 · aa0599b · aa0599b
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,5 +1,5 @@
 Package: canvasXpress
-Version: 1.18.5
+Version: 1.18.8
 Title: Visualization Package for CanvasXpress in R
 Description: Enables creation of visualizations using the CanvasXpress framework
     in R. CanvasXpress is a standalone JavaScript library for reproducible research

diff --git a/NEWS.md b/NEWS.md
@@ -6,11 +6,14 @@ information on changes to the stand-alone JavaScript CanvasXpress library see th
 
 ---
 
+## v1.18.8
+* Updated CanvasXpress JavaScript and CSS libraries to v18.8
+
 ## v1.18.5
-* Updated CanvasXpress JavasScript and CSS libraries to v18.5
+* Updated CanvasXpress JavaScript and CSS libraries to v18.5
 
 ## v1.18.3
-* Updated CanvasXpress JavasScript and CSS libraries to v18.3
+* Updated CanvasXpress JavaScript and CSS libraries to v18.3
 
 ## v1.18.2
 * Bugfix for destruction of htmlwidget

diff --git a/cran-comments.md b/cran-comments.md
@@ -1,6 +1,6 @@
 ## Comments from Maintainer
 
-Updated CanvasXpress JS libraries to 18.5, code refinement for htmwidget factory
+Updated CanvasXpress JS libraries to 18.8
 
 There are two NOTEs on the CRAN Checks for fedora linux builds that cannot be resolved at the package level -- this package suggests limma from BioConductor (limma) that is not available on those builds.
 
@@ -10,6 +10,7 @@ There are two NOTEs on the CRAN Checks for fedora linux builds that cannot be re
 
 * ubuntu 16.04, R 3.3.2
 * ubuntu 16.04, R 3.4.3
+* ubuntu 16.04, R 3.4.4
 
 * ubuntu 14.04.5 (on travis-ci), R 3.3.3
 * ubuntu 14.04.5 (on travis-ci), R 3.4.2

diff --git a/inst/extdata/cX-circular2-dat.txt b/inst/extdata/cX-circular2-dat.txt
@@ -1,5 +1,5 @@
 	s1	s2	s3	s4	s5	s6	s7	s8	s9	s10	s11	s12	s13	s14	s15	s16	s17	s18	s19	s20	s21	s22	s23	s24	s25	s26	s27	s28	s29	s30	s31	s32	s33	s34	s35	s36	s37	s38	s39	s40	s41	s42	s43	s44	s45	s46	s47	s48	s49	s50	s51	s52	s53	s54	s55	s56	s57	s58	s59	s60	s61	s62	s63	s64	s65	s66	s67	s68	s69	s70	s71	s72	s73	s74	s75	s76	s77	s78	s79	s80	s81	s82	s83	s84	s85	s86	s87	s88	s89	s90	s91	s92	s93	s94	s95	s96	s97	s98	s99	s100	s101	s102	s103	s104	s105	s106	s107	s108	s109	s110	s111	s112	s113	s114	s115	s116	s117	s118	s119	s120	s121	s122	s123	s124	s125	s126	s127	s128	s129	s130	s131	s132	s133	s134	s135	s136	s137	s138	s139	s140	s141	s142	s143	s144	s145	s146	s147	s148	s149	s150
-Number	1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50
+Number	0.5	1.5	2.5	3.5	4.5	5.5	6.5	7.5	8.5	9.5	10.5	11.5	12.5	13.5	14.5	15.5	16.5	17.5	18.5	19.5	20.5	21.5	22.5	23.5	24.5	25.5	26.5	27.5	28.5	29.5	30.5	31.5	32.5	33.5	34.5	35.5	36.5	37.5	38.5	39.5	40.5	41.5	42.5	43.5	44.5	45.5	46.5	47.5	48.5	49.5	0.5	1.5	2.5	3.5	4.5	5.5	6.5	7.5	8.5	9.5	10.5	11.5	12.5	13.5	14.5	15.5	16.5	17.5	18.5	19.5	20.5	21.5	22.5	23.5	24.5	25.5	26.5	27.5	28.5	29.5	30.5	31.5	32.5	33.5	34.5	35.5	36.5	37.5	38.5	39.5	40.5	41.5	42.5	43.5	44.5	45.5	46.5	47.5	48.5	49.5	0.5	1.5	2.5	3.5	4.5	5.5	6.5	7.5	8.5	9.5	10.5	11.5	12.5	13.5	14.5	15.5	16.5	17.5	18.5	19.5	20.5	21.5	22.5	23.5	24.5	25.5	26.5	27.5	28.5	29.5	30.5	31.5	32.5	33.5	34.5	35.5	36.5	37.5	38.5	39.5	40.5	41.5	42.5	43.5	44.5	45.5	46.5	47.5	48.5	49.5
 Sepal.Length	5.1	4.9	4.7	4.6	5	5.4	4.6	5	4.4	4.9	5.4	4.8	4.8	4.3	5.8	5.7	5.4	5.1	5.7	5.1	5.4	5.1	4.6	5.1	4.8	5	5	5.2	5.2	4.7	4.8	5.4	5.2	5.5	4.9	5	5.5	4.9	4.4	5.1	5	4.5	4.4	5	5.1	4.8	5.1	4.6	5.3	5	7	6.4	6.9	5.5	6.5	5.7	6.3	4.9	6.6	5.2	5	5.9	6	6.1	5.6	6.7	5.6	5.8	6.2	5.6	5.9	6.1	6.3	6.1	6.4	6.6	6.8	6.7	6	5.7	5.5	5.5	5.8	6	5.4	6	6.7	6.3	5.6	5.5	5.5	6.1	5.8	5	5.6	5.7	5.7	6.2	5.1	5.7	6.3	5.8	7.1	6.3	6.5	7.6	4.9	7.3	6.7	7.2	6.5	6.4	6.8	5.7	5.8	6.4	6.5	7.7	7.7	6	6.9	5.6	7.7	6.3	6.7	7.2	6.2	6.1	6.4	7.2	7.4	7.9	6.4	6.3	6.1	7.7	6.3	6.4	6	6.9	6.7	6.9	5.8	6.8	6.7	6.7	6.3	6.5	6.2	5.9
 Sepal.Width	3.5	3	3.2	3.1	3.6	3.9	3.4	3.4	2.9	3.1	3.7	3.4	3	3	4	4.4	3.9	3.5	3.8	3.8	3.4	3.7	3.6	3.3	3.4	3	3.4	3.5	3.4	3.2	3.1	3.4	4.1	4.2	3.1	3.2	3.5	3.6	3	3.4	3.5	2.3	3.2	3.5	3.8	3	3.8	3.2	3.7	3.3	3.2	3.2	3.1	2.3	2.8	2.8	3.3	2.4	2.9	2.7	2	3	2.2	2.9	2.9	3.1	3	2.7	2.2	2.5	3.2	2.8	2.5	2.8	2.9	3	2.8	3	2.9	2.6	2.4	2.4	2.7	2.7	3	3.4	3.1	2.3	3	2.5	2.6	3	2.6	2.3	2.7	3	2.9	2.9	2.5	2.8	3.3	2.7	3	2.9	3	3	2.5	2.9	2.5	3.6	3.2	2.7	3	2.5	2.8	3.2	3	3.8	2.6	2.2	3.2	2.8	2.8	2.7	3.3	3.2	2.8	3	2.8	3	2.8	3.8	2.8	2.8	2.6	3	3.4	3.1	3	3.1	3.1	3.1	2.7	3.2	3.3	3	2.5	3	3.4	3
 Petal.Length	1.4	1.4	1.3	1.5	1.4	1.7	1.4	1.5	1.4	1.5	1.5	1.6	1.4	1.1	1.2	1.5	1.3	1.4	1.7	1.5	1.7	1.5	1	1.7	1.9	1.6	1.6	1.5	1.4	1.6	1.6	1.5	1.5	1.4	1.5	1.2	1.3	1.4	1.3	1.5	1.3	1.3	1.3	1.6	1.9	1.4	1.6	1.4	1.5	1.4	4.7	4.5	4.9	4	4.6	4.5	4.7	3.3	4.6	3.9	3.5	4.2	4	4.7	3.6	4.4	4.5	4.1	4.5	3.9	4.8	4	4.9	4.7	4.3	4.4	4.8	5	4.5	3.5	3.8	3.7	3.9	5.1	4.5	4.5	4.7	4.4	4.1	4	4.4	4.6	4	3.3	4.2	4.2	4.2	4.3	3	4.1	6	5.1	5.9	5.6	5.8	6.6	4.5	6.3	5.8	6.1	5.1	5.3	5.5	5	5.1	5.3	5.5	6.7	6.9	5	5.7	4.9	6.7	4.9	5.7	6	4.8	4.9	5.6	5.8	6.1	6.4	5.6	5.1	5.6	6.1	5.6	5.5	4.8	5.4	5.6	5.1	5.1	5.9	5.7	5.2	5	5.2	5.4	5.1

diff --git a/inst/extdata/cX-circular2-var.txt b/inst/extdata/cX-circular2-var.txt
@@ -1,5 +1,5 @@
 	Ring
-Number	-1
+Number	
 Sepal.Length	1
 Sepal.Width	2
 Petal.Length	2

diff --git a/inst/extdata/cX-ideogram-dat.txt b/inst/extdata/cX-ideogram-dat.txt
@@ -0,0 +1,201 @@
+	S1	S2	S3	S4	S5	S6	S7	S8	S9	S10
+V1	52.79	24.71	14.35	22.23	42.42	12.38	19.18	19.6	51.81	20.2
+V2	53.39	28.1	8.02	24.12	21.36	28.89	16.29	27.44	38.8	18.3
+V3	31.11	13.84	16.32	7.62	29.04	2.66	11.83	8.6	52.39	8.55
+V4	42.48	6.54	14.22	6.19	51.77	6.26	6.4	4.32	47.32	3.13
+V5	21.44	8.39	17.61	1.59	42.14	6.91	14.92	5.04	30.25	20.55
+V6	47.6	25.45	7.53	6.22	40.27	10.96	28.39	19.22	37.05	11.5
+V7	22.9	23.06	3.38	25.36	31.83	1.15	25.07	10.77	23.24	24.39
+V8	35.39	3.88	19.33	20.16	42.14	21.13	25.74	24.42	25.39	2.43
+V9	52.37	6.73	13.85	11.98	21.89	4.12	24.02	19	25.97	23.68
+V10	52.58	23.67	7.66	21.44	47.43	4.87	22.18	20.36	52.05	2.86
+V11	31.75	16.88	21.22	1.41	45.79	26.28	17.74	9.64	22.42	9.45
+V12	24.37	4.16	24.06	23.13	41.6	27.75	13.84	7.34	45.81	16.44
+V13	46.31	15.54	6.64	22.44	52.65	14.93	5.5	24.09	22.05	9.59
+V14	35.7	19.79	2.5	26.23	34.06	23.88	16.45	7.96	24.18	3.22
+V15	35.47	5.46	8.68	2.91	22.42	6.71	1.83	22.89	28.1	14.21
+V16	52.58	27.38	27.51	14.4	47.27	15.92	13.59	26.11	33	23.06
+V17	38.08	15.55	28.65	28.74	47.06	16.09	20.78	26.79	43.36	22.28
+V18	53.38	7.1	26.57	11.79	40.73	26.29	26.21	5.92	53.16	6.62
+V19	29.9	13.26	7.23	5.38	53.67	28.59	25.78	21.36	52.78	13.46
+V20	52.6	19.51	14.72	15.76	52.13	11.8	1.05	20.58	29.03	17.05
+V21	32.48	24.14	21.4	11.61	32.99	7.31	10.01	27.88	43.2	1.14
+V22	30.62	26.5	26.38	24.57	21.88	20.69	13.17	13.96	41.89	28.89
+V23	43.32	18.91	11.68	22.23	26.85	11.23	25.33	2.87	46.3	9.78
+V24	22.35	22.74	27.62	12.85	36.96	1.77	26.33	2.53	27.88	26.44
+V25	52.04	3.77	14.24	14.65	28.39	14.11	25.47	21.81	42.57	18.74
+V26	47.25	13.18	26.74	17.95	53.01	26.92	1.61	4.51	30.27	7.34
+V27	25.46	16.02	25.93	11.33	53.77	17.54	1.39	24.03	23.83	13.23
+V28	22.81	10.33	24.77	26.01	28.95	23.99	12.01	17.69	35.64	12.08
+V29	49.27	26.71	6.64	14.77	51.25	28.48	1.55	10.43	31.01	17.18
+V30	42.41	10.58	15.27	14.52	40.17	22.83	12.05	1.56	22.99	27.03
+V31	45.11	18.03	2.03	22.29	47.98	18.79	1.27	3.41	30.1	9.83
+V32	52.17	16.1	19.34	5.16	42.09	20.79	20.52	1.7	29.79	28.78
+V33	42.62	6.73	9.88	20.52	32.33	23.13	27.96	18.97	47.05	26.31
+V34	34.15	27.79	1.84	8.72	23.68	13.74	8.7	13.29	45.97	10.63
+V35	53.41	8.13	27.7	1.16	33.81	17.28	17.65	3.52	26.6	1.81
+V36	46.08	16.98	2.9	6.39	48.8	14.27	1.16	19.95	26.05	16.55
+V37	47.68	20.6	26.02	2.24	30.25	5.2	27.69	27.32	25.77	1.83
+V38	43.9	17.09	3.2	27.51	21.37	25.93	26.64	20.24	33.7	17.47
+V39	48.23	13.08	5.52	7.6	49.08	28.7	8.77	13.11	32.41	2.72
+V40	33.18	9.4	10.42	21.24	44.66	25.64	12.85	7.75	21.55	28.84
+V41	42.38	23.57	21.18	25.08	43.04	11.07	14.21	1.42	32.97	21.7
+V42	30.55	3.97	4.38	28.78	39.17	12.88	4.53	18.51	48.28	7.76
+V43	41.59	14.67	21.58	15.97	32.76	6.12	26.85	15.79	41.7	7.31
+V44	46	15.58	27.91	1.88	31.55	28.62	14.72	15.09	52.69	8.05
+V45	52.78	22.19	15.16	1.41	45.68	9.69	12.1	7.3	21.85	3.27
+V46	47.42	27.04	15.18	26.67	23.72	24.41	28.73	22.77	22.13	8.03
+V47	25.76	1.63	11.07	19.24	29.78	9.65	21.95	13.94	48.78	7.68
+V48	48.6	27.58	20.39	19.72	35.11	28.69	23.7	1.95	33.49	27.96
+V49	41.85	15.79	7.88	16.83	52.66	16.14	5.35	18.82	27.15	5.45
+V50	45.62	21.21	11.66	5.16	22.28	11.81	16.28	15.32	33.85	22.43
+V51	46.29	25.75	19.88	20.76	22.11	21.46	7.11	26.73	44.82	3.51
+V52	24.36	8.99	9.74	27.87	32.85	27.9	18.32	14.07	37.25	17.46
+V53	36.43	20.25	1.86	10.53	21.23	4.09	19.13	18.67	36.86	19.04
+V54	25.61	11.06	9.71	17.51	32.42	5.87	28.71	7.12	44.66	3.21
+V55	28.35	16.72	6.6	21.55	39.72	5.16	9.52	6.6	41.89	4.98
+V56	31.16	24.99	5.19	8.29	32.85	5.62	21.49	16.94	48.36	26.06
+V57	28.1	14.02	18.97	24.52	48.45	18.57	11.57	26.8	23.16	7.75
+V58	34.22	18.8	4.05	5.68	22.38	6.06	19	9.99	38.28	12.62
+V59	50	5.17	13.58	27.32	48.93	12.52	12.53	3.9	27.92	13.57
+V60	51.8	14.39	27.67	17.76	49.12	18.48	5.37	21.47	26.36	5.42
+V61	21.06	27.43	4.66	4.66	43.69	23.29	10.97	24.48	39.68	24.51
+V62	38.43	26.14	9.59	21.03	21.09	20.03	19.43	26.53	35.09	19.22
+V63	52.81	25.31	18.03	8.39	47.76	23.69	26.31	26.5	37.19	25.91
+V64	25.14	7.08	17.93	13.86	21.06	23.32	27.77	1.05	51.25	19.22
+V65	48.36	8.08	18.26	16.15	28.64	13.73	13.87	16.39	42.95	1.75
+V66	37.43	11.5	23.1	10.51	48.75	5.03	28.38	18.39	27.03	17.35
+V67	22.67	19.74	20.84	15.24	40.62	18.13	5.79	8.72	45.6	27.13
+V68	39.33	19.08	25.75	14.02	38.13	13.18	25.47	2.38	33.72	3.71
+V69	32.02	13.58	25.5	3.88	22.28	5.56	8.13	18.99	32.71	4.26
+V70	26.62	3.28	25.59	18.33	27.65	15.9	20.44	28.41	46.91	6.13
+V71	51.91	26.1	2.84	28.74	31.25	23.36	12.53	15.14	51.49	10.04
+V72	48.71	21.97	15.89	28.65	49.3	21.22	3.76	20.03	42.07	18.88
+V73	23.13	2.08	10.52	21.58	48.12	17.61	4.93	15.71	26.94	28.32
+V74	25.16	27.29	27.77	21.57	53.14	19.33	6.46	15.55	38.21	22.02
+V75	27.01	18.7	18.35	25.85	34.58	16.19	13.52	21.68	33.73	7.28
+V76	40.99	15.97	19.43	22.44	46.51	27.81	11.62	2.95	44.24	27.83
+V77	27.63	20.4	23.63	18.05	39.83	27.58	26.87	8.77	34.69	3.6
+V78	27.43	2.53	1.74	26.48	22.16	14.38	7.54	11.17	43.99	15.86
+V79	37.72	24.1	13.48	1.62	31.68	24.96	23.16	12.29	25.18	16.59
+V80	46.47	23.57	6.71	11.72	53.77	7.37	1.13	20.3	22.93	6.53
+V81	49.41	28.3	16.59	15.22	27.74	6.38	3.01	20.2	38.05	2.12
+V82	52.69	14.29	4.48	5.06	38.24	20.31	13.41	10.79	35.45	9.82
+V83	48.98	21.97	22.63	3.21	46.84	28.64	5.27	15.32	23.21	17.51
+V84	25.76	3.48	16.51	15.99	40.09	17.21	22.1	24.21	22.85	26.39
+V85	29.57	22.65	14.76	4.48	47.37	12.4	21.85	12.72	25.18	11.03
+V86	22.01	6.11	22.28	15.93	46.41	6.62	21.88	8.61	23.99	15.67
+V87	23.29	24.59	2.47	21.52	23.92	11.13	14.74	17.02	33.5	22.62
+V88	30.62	18.08	2.31	19.1	45.56	27.75	3.24	9.69	42.93	4.19
+V89	24.13	1.35	11.88	25.51	48.22	1.37	28.94	5.28	38.25	15.38
+V90	49.63	5.33	18.6	20.61	22.34	11.06	2.22	16.54	53.47	8.68
+V91	42.2	19.69	4.01	26.61	34.98	13.31	4.99	26.61	47	22.4
+V92	48.24	17.15	28.34	10.62	30.8	15.28	21.08	5.84	49.72	13.17
+V93	51.71	3.67	25.57	13.12	38.31	8.22	22.73	13.4	47.61	1.33
+V94	41.29	6.55	21.66	3.17	36.62	8.21	19.98	23.25	50.76	6.85
+V95	40.45	27.37	2.53	13.66	28.2	14.32	5.53	14.67	45.83	15.08
+V96	42.23	15.24	10.62	15.37	33.92	1.51	8.22	23.53	49.44	23.54
+V97	30.88	19.84	8.42	12.73	24.76	15.13	23.73	25.79	48.92	25.5
+V98	52.89	23.31	3.3	21.71	29.33	10.32	6.42	23.83	25.11	19.65
+V99	41.38	7.44	4.04	17.54	22.94	1.33	8.61	15.45	49.55	15.54
+V100	36.81	21.34	3.01	7.09	40.02	20.06	21.23	20.02	31.02	17.84
+V101	52.29	5.38	9.99	27.28	29.16	1.64	7.27	7.86	23.61	19.17
+V102	48.66	10.33	15.84	12.52	31.17	15.37	9.89	16.43	25.28	27.01
+V103	22.81	20.15	13.89	6.64	30.87	28.08	11.89	7.24	44.44	4.9
+V104	34.43	7.32	7.79	12.2	33.55	16.55	13.96	9.8	51.31	3.19
+V105	39.06	17.33	9.56	20.28	40.86	17.91	22.71	13.64	31.37	6.01
+V106	45.03	5.67	22.87	12.66	29.29	4.14	7.56	16.01	36.65	12.56
+V107	51.77	4.1	26	3.96	32.23	5.26	11.71	17.96	39.59	20.08
+V108	49.81	12.7	1.62	11.22	52.71	22.16	13.26	15	42.64	9.27
+V109	43.15	20.12	28.12	8.84	26.77	20.31	9.84	15.72	24.4	27.82
+V110	41.2	20.39	7.76	8.74	39.75	20.92	15.3	10.16	50.94	15.1
+V111	43.31	21.41	24.5	14.25	42.58	10.01	9.79	11.6	24.88	27.58
+V112	38.03	9.96	18.37	3.06	28.42	2.99	1.76	4.72	39.11	21.21
+V113	38.78	11.89	15.05	21.22	38.79	15.56	7.43	16.35	24.81	13.12
+V114	29.68	28.51	27.6	27.92	44.52	18.12	25.71	16.97	36.77	10.44
+V115	52.9	19.04	28.71	10.37	27.04	18.85	28.06	18.31	31.31	27.66
+V116	50.77	21.27	28.56	5.12	35.39	8.15	11.73	8.75	43.82	26.65
+V117	28.09	21.14	17.46	27.36	51.84	26.42	13.57	18.96	33.6	19.64
+V118	29.81	7.84	27.68	22.15	34.79	18.01	26.49	15.11	44.04	4
+V119	43.29	24.01	13.9	27.21	42.29	17.94	16.38	25.6	49.04	14.41
+V120	31.46	9.34	8.84	19.22	52.91	13.62	6.53	26.15	24.57	13.06
+V121	42.03	21.07	27.35	24.6	45.33	24.58	5.59	9.23	51.35	1.02
+V122	41.69	22.28	12.03	7.11	32.98	5.01	15.36	3.16	22.33	3.7
+V123	47.62	11.61	28.85	10.52	36.34	19.35	22.81	15.83	42.17	25.63
+V124	30.29	9.92	2.32	4.99	34.83	23.06	17.59	10.86	45.17	16.3
+V125	49.02	26.6	15.79	20.37	52.66	28.84	19.57	24.66	42.02	20.58
+V126	37.26	10.71	22.96	5.43	29.59	14.85	16.53	24	52.94	26.8
+V127	33.25	2.41	17.29	27.27	32.39	28.05	24.16	20.49	28.8	11.27
+V128	39.38	6.45	20.91	9.61	45.47	18.77	9.13	13.85	31.49	21.25
+V129	51.05	15.04	20.68	8.44	48.1	19.95	19.61	28.13	35.33	17.97
+V130	29.34	16.32	6.32	2.27	53.69	14.11	18.18	14.14	35.59	6.2
+V131	36.38	12.11	8.04	28.07	24.38	23.47	22.72	27.67	49.74	5.53
+V132	29.6	10.14	24.5	8.97	48.86	20.44	1.83	3.96	21.76	9.1
+V133	52.36	21.32	23.69	20.39	46.22	24.85	21.1	24.07	30.68	11.32
+V134	22.61	13.82	28.27	3.5	32.82	12.1	28.91	10.63	52.58	25.55
+V135	25.18	27.88	26.97	24.2	53.01	23.7	22.25	10.12	29.71	5.07
+V136	23.97	27.01	9.14	11.7	23.19	12.18	20.88	25.48	38.24	20.58
+V137	49.63	13.67	1.34	17.56	50.43	7.5	4.14	12.52	48.7	22.08
+V138	51.08	10.04	18.23	14.37	44.22	1.55	7.89	23.5	24.09	8.86
+V139	32.88	4.6	4.6	3.62	48.38	2.13	28.81	7.23	25.57	8.73
+V140	32.27	17.45	28.26	1.66	39.41	28.36	2.61	23.5	26.42	26.57
+V141	45.43	1.89	19.53	14.48	31.9	20.54	1.01	23.49	53.54	11.51
+V142	53.68	22.09	15.49	6.19	40.87	25.97	25.33	1.17	31.83	23.54
+V143	36.4	3.93	11.53	12.81	28.34	2.62	4.94	21.85	31.44	15.91
+V144	38.8	19.03	24.23	9.15	30.01	18.03	19.11	5.56	45.77	28.97
+V145	50.44	24.58	14.49	11.83	53.21	13.68	9.97	19.76	35.37	5.13
+V146	31.63	16.26	23.55	20.4	27.16	1.02	21.76	12.51	23.73	10.42
+V147	38.24	7.25	5.81	19.28	30.62	16.17	19.11	3.93	49.73	19.5
+V148	46.77	12.63	25.33	27.77	23.56	28.56	18.59	10.73	25.1	2.19
+V149	49.79	2.32	1.86	26.89	41.33	17.48	14.26	15.09	51.34	19.84
+V150	26.78	2.77	19.56	18.37	45.22	16.96	3.91	25.44	35.53	8.37
+V151	51.84	11.17	21.27	1.05	32.11	2.47	16.07	2.64	41.37	4.85
+V152	41.1	27.01	22.43	1.42	22.96	18.39	21.03	3.31	47.51	12.6
+V153	46.15	23.08	15.63	10.09	29.78	16.61	11.71	5.25	28.76	15.49
+V154	48.44	19.05	12.58	4.44	30.65	17.2	22.99	13.83	24.92	25.95
+V155	43.75	27.45	7.52	28.08	48.03	7.82	28.79	13.96	43.92	1.08
+V156	23.27	9.73	6.63	7.57	46.95	5.47	8.81	27.18	43.93	20.68
+V157	46.11	9.8	19.72	1.68	39.37	8.94	7.18	22.96	43.29	16.61
+V158	37.81	28.13	27.44	14.8	38.41	6.19	12.98	15.88	34.2	21.84
+V159	25.45	7.63	13.02	13.04	45.67	25.06	18.63	5.5	24.81	10.08
+V160	31.85	12.55	10.13	13.15	23.25	16.16	20.33	27.88	36.94	3.71
+V161	38.29	16.24	22.73	14.31	43.97	10.44	26.83	20.28	38.77	2.73
+V162	27.41	10.64	18.83	16.97	31.26	13.18	2.64	5.84	35.93	24.41
+V163	53.9	1.2	28.76	5.34	32.91	18.14	1.6	27.94	41.53	16.48
+V164	42.34	8.83	28.06	1.11	21.38	14.28	28.54	14.8	45.92	5.65
+V165	22.59	27.42	2.06	3.08	42.51	18.3	21.8	10.97	28.17	9.76
+V166	24.03	5.37	3.06	24.75	26.88	17.01	7.32	6.12	53.62	19.39
+V167	25.21	12.38	4.06	8.5	23.66	26.27	6.5	13.97	52.23	2.53
+V168	21.43	9.02	11.43	24.84	45.26	14.65	1.01	2.52	21.9	16.26
+V169	45.57	11.08	20.8	26.15	29.2	26.35	9.27	15.34	34.89	28.51
+V170	46.2	11.07	12.05	16.71	45.23	6.56	27.86	17.12	51.75	6.62
+V171	21.35	20.14	19.06	22.41	36.04	14.14	1.79	19.66	25.71	23.23
+V172	49.33	24.28	22.3	27.59	53.76	26.28	18.32	7.68	47.18	1.02
+V173	21.78	17.01	23.26	23.39	25.3	4.18	2.08	10.78	33.78	1.32
+V174	30.89	8.35	1.4	25.68	28.98	22.62	18.18	8.84	37.04	2.99
+V175	21.55	11.85	24.33	8.5	38.4	9.96	10.91	19.72	41.95	12.44
+V176	52.66	1.12	23.65	27.21	37.26	27.38	7.5	17.98	52.83	13.38
+V177	34.72	18.76	28.1	18.17	23.51	15.65	7.27	23.02	30.09	18.72
+V178	30.5	4.8	3.22	16.88	31	28.99	26.39	24.91	45.3	11.19
+V179	43.95	11.96	13.07	25	31.82	21.9	17.47	15.41	39.76	10.66
+V180	48.1	1.12	2.47	21.34	43.53	25.06	16.5	6.3	28.09	25.49
+V181	29.38	11.34	22.09	6.79	21.35	4.75	1.38	8.5	33.73	15.17
+V182	21.45	3.14	13.84	21.62	34.39	1.32	23.04	9.6	33.36	12.83
+V183	27.55	13.14	1.92	23.19	34.43	21.65	6.65	8.66	23.27	13.41
+V184	42	8.04	10.01	22.62	31.02	26.42	10.56	6.07	52.1	22.73
+V185	50.68	11.8	20.5	13.2	49.5	16.36	23.47	1.26	52.11	6.87
+V186	46.9	6.11	9.83	5.76	33.14	20.6	22.2	10.86	24.28	7.22
+V187	23.49	20.91	13.9	3.77	41.37	16.67	20.85	14.56	41.59	2.48
+V188	39.56	7.5	22.68	14.88	26.3	26.24	22.45	27.49	33.75	12.28
+V189	41	21.73	26.46	24.01	37.7	19.38	23.42	12.84	32.01	5.28
+V190	28.02	16.13	9.13	22.94	29.45	20.2	15.4	13.69	45.03	21.07
+V191	26.45	14.49	20.43	7.38	24.85	25.36	2.69	4.91	46.74	18.85
+V192	35.11	7.17	22.37	7.18	35.22	17.4	13.75	25.76	37.96	14.03
+V193	31.8	28.62	4.03	27.35	34.46	4.35	14.3	8.43	31.49	27.2
+V194	52.7	5.97	5.7	10.52	44.97	8.57	15.36	6.99	47.65	17.3
+V195	50.45	22.98	24.95	20.9	22.78	22.91	17.43	21.92	25.3	24.46
+V196	21.86	20.42	18.33	5.72	29.44	28.62	7.23	5.17	37.31	3.12
+V197	48.8	13.89	15.33	11.12	48.7	27.98	19.88	14.3	42.36	19.42
+V198	28.11	9.97	25.52	3.68	48.55	2.26	20.76	9.64	42.63	9.84
+V199	30.79	2.41	13.33	23.13	52.03	4.8	13.08	26.53	41.04	18.68
+V200	45.36	25.66	7.86	3.99	45.06	21.64	4.39	23.03	23	14.41
diff --git a/inst/extdata/cX-ideogram-smp.txt b/inst/extdata/cX-ideogram-smp.txt
@@ -0,0 +1,11 @@
+	Factor1	Factor2	Factor3	Factor4
+S1	Lev:2	Lev:1	Lev:4	Lev:1
+S2	Lev:1	Lev:2	Lev:1	Lev:4
+S3	Lev:1	Lev:2	Lev:2	Lev:2
+S4	Lev:1	Lev:1	Lev:1	Lev:4
+S5	Lev:2	Lev:1	Lev:4	Lev:5
+S6	Lev:1	Lev:3	Lev:4	Lev:2
+S7	Lev:1	Lev:3	Lev:1	Lev:2
+S8	Lev:1	Lev:1	Lev:4	Lev:1
+S9	Lev:2	Lev:1	Lev:2	Lev:4
+S10	Lev:1	Lev:2	Lev:2	Lev:3