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Lab Journal Club
Usually every Tuesday at 16:00
ISMB Papers
*15 Jamming Estimation of confidence in phylogeny: the complete-and-partial bootstrap technique
*21/04 No JC
*28/04 Carsten Multiple whole-genome alignments without a reference organism
*05/05 NO JC *12/05 NO JC *19/05 NO JC *26/05 Ionas
*02/06 Giovani RNA structure prediction from evolutionary patterns of nucleotide composition *09/06 Jia Ming PRALINETM: a strategy for improved multiple alignment of transmembrane proteins *16/06 Thomas PartTree *23/06 Meri *30/06 Jean François
*13/10 Ema : Enredo and Pecan : Genome-wide mammalian consistency-based multiple alignment with paralogs *20/10 NO JC *27/10 Mery
*3/11 Isabel *10/11 Carsten Velvet: Algorithms for de novo short read assembly using de Brujin graphs *17/11 NO JC *24/11 NO JC
*1/12 NO JC *8/12 NO JC *15/12 NO JC *22/12 NO JC
*19/01 Ionas The genetic architecture of Down syndrome phenotypes revealed by high-resolution analysis of human segmental trisomies *26/01 Ema
*02/02 Thomas Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions
*04/05 First round of ECCB papers
Carsten : (56) A dynamic programming algorithm for identification of triplex-forming sequences
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Ema : (98) Scalability of large-scale protein domain inference
Jia-MIng, Jeff, Ionas: (142) SATCHMO-JS co-estimation of a multiple sequence alignment and phylogenetic tree under extreme protein structural divergence
*08/06 Jeff/Carsten/Ionas Disentangling direct from indirect co-evolution of residues in protein alignments