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1. JuliaPhylo/PhyloNetworks.jl JuliaPhylo/PhyloNetworks.jl Public

   A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks

   Julia 157 49

2. khabbazian/l1ou khabbazian/l1ou Public

   Detection of evolutionary shifts in Ornstein-Uhlenbeck models

   R 19 7

3. lamho86/phylolm lamho86/phylolm Public

   R 32 13

4. JuliaPhylo/PhyloCoalSimulations.jl JuliaPhylo/PhyloCoalSimulations.jl Public

   Julia 13 2

5. manipulations of trees and networks:... manipulations of trees and networks: outgroup rerooting, and identification of outgroup (on phylogenies that might be missing some species)

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   #=

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   to use the functions in this file, read it within julia with:

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   include("path/to/outgroup-reroot.jl");

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   but replace 'path/to/' by the actual path to this file on your machine.

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   main function defined in this file:

6. networkPCM-workshop networkPCM-workshop Public

   workshop on phylogenetic comparative methods on networks, July 2023

   CSS 2