merge (#6)

* [running] fix multiprocessing bugs (brainpy#547)

* [running] fix multiprocessing bugs

* fix tests

* [docs] Fix typo in docs (brainpy#549)

* ⬆️ Bump conda-incubator/setup-miniconda from 2 to 3 (brainpy#551)

Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2 to 3.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](conda-incubator/setup-miniconda@v2...v3)

---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* updates  (brainpy#550)

* [running] fix multiprocessing bugs

* fix tests

* [doc] update doc

* update

* [math] add `brainpy.math.gpu_memory_preallocation()` for controlling GPU memory preallocation

* [math] `clear_buffer_memory` support to clear array and compilation both

* [dyn] compatible old version of `.reset_state()` function

* [setup] update installation info

* ``brainpy.math.defjvp`` and ``brainpy.math.XLACustomOp.defjvp`` (brainpy#554)

* [running] fix multiprocessing bugs

* fix tests

* [doc] update doc

* update

* [math] add `brainpy.math.gpu_memory_preallocation()` for controlling GPU memory preallocation

* [math] `clear_buffer_memory` support to clear array and compilation both

* [dyn] compatible old version of `.reset_state()` function

* [setup] update installation info

* [install] upgrade dependency

* updates

* [math] add `brainpy.math.defjvp`, support to define jvp rules for Primitive with multiple results. See examples in `test_ad_support.py`

* [math] add `brainpy.math.XLACustomOp.defjvp`

* [doc] upgrade `brainpy.math.defjvp` docstring

* ⬆️ Bump actions/setup-python from 4 to 5 (brainpy#555)

Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v4...v5)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Sichao He <1310722434@qq.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

.github/workflows/CI-models.yml

@@ -27,7 +27,7 @@ jobs:
     steps:
       - uses: actions/checkout@v4
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
       - name: Install dependencies
@@ -51,7 +51,7 @@ jobs:
 #    steps:
 #    - uses: actions/checkout@v4
 #    - name: Set up Python ${{ matrix.python-version }}
-#      uses: actions/setup-python@v4
+#      uses: actions/setup-python@v5
 #      with:
 #        python-version: ${{ matrix.python-version }}
 #    - name: Install dependencies
@@ -75,7 +75,7 @@ jobs:
     steps:
     - uses: actions/checkout@v4
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies
@@ -99,7 +99,7 @@ jobs:
 #    steps:
 #      - uses: actions/checkout@v4
 #      - name: Set up Python ${{ matrix.python-version }}
-#        uses: actions/setup-python@v4
+#        uses: actions/setup-python@v5
 #        with:
 #          python-version: ${{ matrix.python-version }}
 #      - name: Install dependencies
@@ -124,7 +124,7 @@ jobs:
     steps:
     - uses: actions/checkout@v4
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies
@@ -150,7 +150,7 @@ jobs:
 #    steps:
 #    - uses: actions/checkout@v4
 #    - name: Set up Python ${{ matrix.python-version }}
-#      uses: actions/setup-python@v4
+#      uses: actions/setup-python@v5
 #      with:
 #        python-version: ${{ matrix.python-version }}
 #    - name: Install dependencies

.github/workflows/CI.yml

@@ -29,7 +29,7 @@ jobs:
     steps:
       - uses: actions/checkout@v4
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
       - name: Install dependencies
@@ -62,7 +62,7 @@ jobs:
 #    steps:
 #    - uses: actions/checkout@v4
 #    - name: Set up Python ${{ matrix.python-version }}
-#      uses: actions/setup-python@v4
+#      uses: actions/setup-python@v5
 #      with:
 #        python-version: ${{ matrix.python-version }}
 #    - name: Install dependencies
@@ -96,7 +96,7 @@ jobs:
     steps:
     - uses: actions/checkout@v4
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies
@@ -128,7 +128,7 @@ jobs:
 #    steps:
 #      - uses: actions/checkout@v4
 #      - name: Set up Python ${{ matrix.python-version }}
-#        uses: actions/setup-python@v4
+#        uses: actions/setup-python@v5
 #        with:
 #          python-version: ${{ matrix.python-version }}
 #      - name: Install dependencies
@@ -163,7 +163,7 @@ jobs:
 #    steps:
 #    - uses: actions/checkout@v4
 #    - name: Set up Python ${{ matrix.python-version }}
-#      uses: actions/setup-python@v4
+#      uses: actions/setup-python@v5
 #      with:
 #        python-version: ${{ matrix.python-version }}
 #    - name: Install dependencies
@@ -199,7 +199,7 @@ jobs:
 #    steps:
 #    - uses: actions/checkout@v4
 #    - name: Set up Python ${{ matrix.python-version }}
-#      uses: actions/setup-python@v4
+#      uses: actions/setup-python@v5
 #      with:
 #        python-version: ${{ matrix.python-version }}
 #    - name: Install dependencies

.github/workflows/docs.yml

@@ -18,7 +18,7 @@ jobs:
 
     steps:
       - uses: actions/checkout@v4
-      - uses: conda-incubator/setup-miniconda@v2
+      - uses: conda-incubator/setup-miniconda@v3
         with:
           auto-update-conda: true
           python-version: "3.10"

docs/core_concept/brainpy_dynamical_system.ipynb

@@ -124,7 +124,7 @@
     "We call `s` as shared arguments because they are same and shared for all nodes/layers. On the contrary, different nodes/layers have different input `x`.\n",
     "\n",
     "Here, it is necessary to explain the usage of ``bp.share``.\n",
-    "- ``bp.share.save( )``: The function saves shared arguments in the global context. User can save shared arguments in tow ways, for example, if user want to set the current time ``t=100``, the current time step ``dt=0.1``,the user can use ``bp.share.save(\"t\",100,\"dt\",0.1)`` or                      ``bp.share.save(t=100,dt=0.1)``.\n",
+    "- ``bp.share.save( )``: The function saves shared arguments in the global context. User can save shared arguments in two ways, for example, if user want to set the current time ``t=100``, the current time step ``dt=0.1``,the user can use ``bp.share.save(\"t\",100,\"dt\",0.1)`` or                      ``bp.share.save(t=100,dt=0.1)``.\n",
     "  \n",
     "- ``bp.share.load( )``: The function gets the shared data by the ``key``, for example, ``bp.share.load(\"t\")``.\n",
     "  \n",