Work-around for broken libgfortran

chemreac · Apr 3, 2016 · 82bcf72 · 82bcf72
1 parent 9fc9fdb
commit 82bcf72
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Showing 2 changed files with 10 additions and 3 deletions.
diff --git a/_run_tests.sh b/_run_tests.sh
@@ -1,3 +1,9 @@
 #!/bin/bash
-conda install -c chemreac chemreac pytest
-py.test --pyargs chemreac
+conda install --yes -c chemreac chemreac pytest
+
+# http://stackoverflow.com/questions/36041964/messed-up-numpy-installation-gfortran-1-4-not-found-bug
+# https://github.com/ContinuumIO/anaconda-issues/issues/686
+conda remove --yes libgfortran
+conda install --yes libgcc --force
+
+MPLBACKEND=Agg py.test --pyargs chemreac
diff --git a/test_anaconda_chemreac.sh b/test_anaconda_chemreac.sh
@@ -1,4 +1,5 @@
 #!/bin/bash
+BASE_PATH=$(unset CDPATH && cd "$(dirname $0)" && echo $PWD)
 DOCKERIMAGE=continuumio/miniconda
 
 if [[ ! -d opt_test ]]; then
@@ -9,5 +10,5 @@ cp -r /opt/* /new_opt/
 EOF
 fi
 
-docker run --rm -v $(pwd):/chemreac_anaconda -it $DOCKERIMAGE /chemreac_anaconda/_run_tests.sh
+docker run --rm -v $(pwd):/chemreac_anaconda -v $BASE_PATH/opt_test:/opt -it $DOCKERIMAGE /chemreac_anaconda/_run_tests.sh