The objective of PhyloTrees.jl is to provide a simple, fast, and flexible method of simulating genetic sequence data from a specified phylogenetic tree and substitution model with native Julia code.
Currently the following substitution models are supported by PhyloTrees.jl (full and relative rate forms):
- JC69
- K80
- F81
- F84
- HKY85
- TN93
- GTR
These substitution models may be utilized in conjunction with heterogeneous site rates.
Pkg.add("PhyloTrees")
To enable plotting, install Plots.jl and one of its supported backends.
A demo of the functionality of PhyloTrees.jl can be found here.