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Miachol committed Apr 21, 2020
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12 changes: 6 additions & 6 deletions README.md
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@@ -1,27 +1,27 @@
<img src="https://img.shields.io/badge/lifecycle-experimental-orange.svg" alt="Life cycle: experimental"> <a href="https://godoc.org/github.com/openbiox/bioextr"><img src="https://godoc.org/github.com/openbiox/bioextr?status.svg" alt="GoDoc"></a>
<img src="https://img.shields.io/badge/lifecycle-experimental-orange.svg" alt="Life cycle: experimental"> <a href="https://godoc.org/github.com/openanno/bioextr"><img src="https://godoc.org/github.com/openanno/bioextr?status.svg" alt="GoDoc"></a>

## bioextr

[bioextr](https://github.com/openbiox/bioextr) is a simple command line tool to extract information from text or json files.
[bioextr](https://github.com/openanno/bioextr) is a simple command line tool to extract information from text or json files.

## Installation

```bash
# windows
wget https://github.com/openbiox/bioextr/releases/download/v0.1.0/bioextr.exe
wget https://github.com/openanno/bioextr/releases/download/v0.1.0/bioextr.exe

# osx
wget https://github.com/openbiox/bioextr/releases/download/v0.1.0/bioextr_osx
wget https://github.com/openanno/bioextr/releases/download/v0.1.0/bioextr_osx
mv bioextr_osx bioextr
chmod a+x bioextr

# linux
wget https://github.com/openbiox/bioextr/releases/download/v0.1.0/bioextr_linux64
wget https://github.com/openanno/bioextr/releases/download/v0.1.0/bioextr_linux64
mv bioextr_linux64 bioextr
chmod a+x bioextr

# get latest version
go get -u github.com/openbiox/bioextr
go get -u github.com/openanno/bioextr
```

## Usage
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2 changes: 1 addition & 1 deletion cmd/root.go
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Expand Up @@ -38,7 +38,7 @@ var RootClis = RootClisT{
var RootCmd = &cobra.Command{
Use: "bioextr [filename]",
Short: "A simple command line tool to extract information from text and json files.",
Long: `A simple command line tool to extract information from text and json files. More see here https://github.com/openbiox/bioextr.`,
Long: `A simple command line tool to extract information from text and json files. More see here https://github.com/openanno/bioextr.`,
Run: func(cmd *cobra.Command, args []string) {
if RootClis.Clean {
initCmd(cmd, args)
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13 changes: 9 additions & 4 deletions go.mod
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module github.com/openbiox/bioextr
module github.com/openanno/bioextr

go 1.13

require (
github.com/openbiox/ligo v0.0.0-20200119135627-2571ec0d416e
github.com/sirupsen/logrus v1.4.2
github.com/spf13/cobra v0.0.5
github.com/modern-go/concurrent v0.0.0-20180306012644-bacd9c7ef1dd // indirect
github.com/modern-go/reflect2 v1.0.1 // indirect
github.com/openbiox/ligo v0.0.0-20200421055148-fbc6d165cec4
github.com/sirupsen/logrus v1.5.0
github.com/spf13/cobra v1.0.0
github.com/spf13/pflag v1.0.5 // indirect
github.com/stretchr/testify v1.4.0 // indirect
gonum.org/v1/gonum v0.7.0 // indirect
mvdan.cc/xurls/v2 v2.2.0 // indirect
)
2 changes: 1 addition & 1 deletion main.go
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Expand Up @@ -15,7 +15,7 @@
package main

import (
"github.com/openbiox/bioextr/cmd"
"github.com/openanno/bioextr/cmd"
)

func main() {
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8 changes: 4 additions & 4 deletions pdf2plain/README.md
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Expand Up @@ -13,20 +13,20 @@ Xpdf command line tools (required):

```bash
# windows
wget https://github.com/openbiox/bioextr/releases/download/v0.1.0/pdf2plain.exe
wget https://github.com/openanno/bioextr/releases/download/v0.1.0/pdf2plain.exe

# osx
wget https://github.com/openbiox/bioextr/releases/download/v0.1.0/pdf2plain_osx
wget https://github.com/openanno/bioextr/releases/download/v0.1.0/pdf2plain_osx
mv pdf2plain_osx pdf2plain
chmod a+x pdf2plain

# linux
wget https://github.com/openbiox/bioextr/releases/download/v0.1.0/pdf2plain_linux64
wget https://github.com/openanno/bioextr/releases/download/v0.1.0/pdf2plain_linux64
mv pdf2plain_linux64 pdf2plain
chmod a+x pdf2plain

# get latest version
go get -u github.com/openbiox/bioextr/pdf2plain
go get -u github.com/openanno/bioextr/pdf2plain
```

## Usage
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2 changes: 1 addition & 1 deletion pdf2plain/cmd/root.go
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Expand Up @@ -32,7 +32,7 @@ var RootClis = RootClisT{
var RootCmd = &cobra.Command{
Use: "pdf2plain [input.pdf]",
Short: "A wrapper command line tool to convert pdf files to plain text.",
Long: `A wrapper command line tool to convert pdf files to plain text. More see here https://github.com/openbiox/bioextr.`,
Long: `A wrapper command line tool to convert pdf files to plain text. More see here https://github.com/openanno/bioextr.`,
Run: func(cmd *cobra.Command, args []string) {
if RootClis.Clean {
RootClis.HelpFlags = false
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2 changes: 1 addition & 1 deletion pdf2plain/go.mod
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@@ -1,4 +1,4 @@
module github.com/openbiox/bioextr/pdf2plain
module github.com/openanno/bioextr/pdf2plain

go 1.14

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2 changes: 1 addition & 1 deletion pdf2plain/main.go
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Expand Up @@ -15,7 +15,7 @@
package main

import (
"github.com/openbiox/bioextr/pdf2plain/cmd"
"github.com/openanno/bioextr/pdf2plain/cmd"
)

func main() {
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